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Handbook of Statistical Bioinformatics 2011
- Henry Horng-Shing Lu, Bernhard Schölkopf
, Hongyu Zhao:
Handbook of Statistical Bioinformatics. Springer Handbooks of Computational Statistics, Springer 2011, ISBN 978-3-642-16344-9
Part 1 / Sequence Analysis
- Lei M. Li:
Accuracy Assessment of Consensus Sequence from Shotgun Sequencing. 3-30 - Liang Chen:
Statistical and Computational Studies on Alternative Splicing. 31-53 - Bo Jiang
Statistical Learning and Modeling of TF-DNA Binding. 55-72 - Michael Q. Zhang:
Computational Promoter Prediction in a Vertebrate Genome. 73-85 - Tian Zheng
Discovering Influential Variables: A General Computer Intensive Method for Common Genetic Disorders. 87-107 - Jim C. Huang, Brendan J. Frey:
STORMSeq: A Method for Ranking Regulatory Sequences by Integrating Experimental Datasets with Diverse Computational Predictions. 109-134 - Grace Shu-Chuan Chen, Mingze Li, Michael S. Rosenberg
Mixture Tree Construction and Its Applications. 135-147
Part 2 / Expression Data Analysis
- Richard E. Kennedy
Experimental Designs and ANOVA for Microarray Data. 151-169 - Zhining Wen, Zhenqiang Su, Jie Liu, Baitang Ning, Lei Guo, Weida Tong, Leming M. Shi:
The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data. 171-192 - Wai-Ki Yip, Samir B. Amin, Cheng Li:
A Survey of Classification Techniques for Microarray Data Analysis. 193-223 - Hongkai Ji:
Computational Analysis of ChIP-chip Data. 257-282 - Dongjun Chung
eQTL Mapping for Functional Classes of Saccharomyces cerevisiae Genes with Multivariate Sparse Partial Least Squares Regression. 283-298 - Lingyan Ruan, Ming Yuan
Statistical Analysis of Time Course Microarray Data. 299-313
Part 3 / Systems Biology
- Karsten M. Borgwardt
Kernel Methods in Bioinformatics. 317-334 - Koji Tsuda:
Graph Classification Methods in Chemoinformatics. 335-351 - Hongzhe Li:
Hidden Markov Random Field Models for Network-Based Analysis of Genomic Data. 353-368 - Tova Fuller, Peter Langfelder, Angela P. Presson, Steve Horvath:
Review of Weighted Gene Coexpression Network Analysis. 369-388 - Ker-Chau Li:
Liquid Association and Related Ideas in Quantifying Changes in Correlation. 389-404 - Tung-Hung Chueh, Henry Horng-Shing Lu:
Boolean Networks. 405-425 - Yanjun Qi, William Stafford Noble:
Protein Interaction Networks: Protein Domain Interaction and Protein Function Prediction. 427-459 - Hyonho Chun, Jia Kang, Xianghua Zhang, Minghua Deng, Haisu Ma, Hongyu Zhao
Reverse Engineering of Gene Regulation Networks with an Application to the DREAM4 in silico Network Challenge. 461-477 - Zhidong Tu, Jun Zhu, Fengzhu Sun:
Inferring Signaling and Gene Regulatory Network from Genetic and Genomic Information. 479-500 - Seiya Imoto, Yoshinori Tamada
Computational Drug Target Pathway Discovery: A Bayesian Network Approach. 501-532 - Elana J. Fertig
Cancer Systems Biology. 533-565 - Xuhua Xia
Comparative Genomics. 567-600 - Bor-Sen Chen, Chia-Hung Chang, Yung-Jen Chuang:
Robust Control of Immune Systems Under Noises: Stochastic Game Approach. 601-627
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