HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX)

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Version:	1.2.4
Depends:	R (≥ 4.0.0)
Imports:	fastglm, caret, parallel, methods, stats, glmnet, tune, recipes
Suggests:	knitr, rmarkdown
Published:	2024-02-09
DOI:	10.32614/CRAN.package.HTRX
Author:	Yaoling Yang [aut, cre], Daniel Lawson [aut]
Maintainer:	Yaoling Yang <yaoling.yang at bristol.ac.uk>
License:	GPL-3
NeedsCompilation:	no
Materials:	README
CRAN checks:	HTRX results

Documentation:

Reference manual:	HTRX.pdf
Vignettes:	HTRX_vignette

Downloads:

Package source:	HTRX_1.2.4.tar.gz
Windows binaries:	r-devel: HTRX_1.2.4.zip, r-release: HTRX_1.2.4.zip, r-oldrel: HTRX_1.2.4.zip
macOS binaries:	r-release (arm64): HTRX_1.2.4.tgz, r-oldrel (arm64): HTRX_1.2.4.tgz, r-release (x86_64): HTRX_1.2.4.tgz, r-oldrel (x86_64): HTRX_1.2.4.tgz
Old sources:	HTRX archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=HTRX to link to this page.