shinyExprPortal: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data
Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.
| Version: | 1.2.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | config, stats, utils, shiny, htmltools, markdown, cli, dplyr, tidyr, yaml, data.table, bslib, iheatmapr, vegawidget, DT, qvalue, parallel, Rfast, rlang, shinyhelper |
| Suggests: | testthat (≥ 3.0.0), whisker, knitr, rmarkdown, r2d3, kableExtra, RColorBrewer |
| Published: | 2024-07-29 |
| DOI: | 10.32614/CRAN.package.shinyExprPortal |
| Author: | Rafael Henkin |
| Maintainer: | Rafael Henkin <r.henkin at qmul.ac.uk> |
| BugReports: | https://github.com/C4TB/shinyExprPortal/issues |
| License: | MIT + file LICENSE |
| URL: | https://c4tb.github.io/shinyExprPortal/, https://github.com/C4TB/shinyExprPortal |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | shinyExprPortal results |
Documentation:
| Reference manual: | shinyExprPortal.pdf |
| Vignettes: |
Full Configuration Guide Portal UI and Code Customization Data Preparation Guide Quick Start Guide for shinyExprPortal |
Downloads:
| Package source: | shinyExprPortal_1.2.1.tar.gz |
| Windows binaries: | r-devel: shinyExprPortal_1.2.1.zip, r-release: shinyExprPortal_1.2.1.zip, r-oldrel: shinyExprPortal_1.2.1.zip |
| macOS binaries: | r-release (arm64): shinyExprPortal_1.2.1.tgz, r-oldrel (arm64): shinyExprPortal_1.2.1.tgz, r-release (x86_64): shinyExprPortal_1.2.1.tgz, r-oldrel (x86_64): shinyExprPortal_1.2.1.tgz |
| Old sources: | shinyExprPortal archive |
Linking:
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