pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data

Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) <doi:10.1093/bioinformatics/bty191>.

Version:	0.0.2
Depends:	R (≥ 3.4.4), ggplot2
Imports:	dplyr, tibble, stringr, rlang
Suggests:	testthat, covr, knitr, ggpubr, rmarkdown, microbenchmark
Published:	2020-12-08
DOI:	10.32614/CRAN.package.pafr
Author:	David Winter [aut, cre], Kate Lee [ctb], Murray Cox [ctb]
Maintainer:	David Winter <david.winter at gmail.com>
BugReports:	https://github.com/dwinter/pafr/issues
License:	MIT + file LICENSE
URL:	https://dwinter.github.io/pafr/
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	pafr results

Documentation:

Reference manual:	pafr.pdf
Vignettes:	pafr_tutorial

Downloads:

Package source:	pafr_0.0.2.tar.gz
Windows binaries:	r-devel: pafr_0.0.2.zip, r-release: pafr_0.0.2.zip, r-oldrel: pafr_0.0.2.zip
macOS binaries:	r-release (arm64): pafr_0.0.2.tgz, r-oldrel (arm64): pafr_0.0.2.tgz, r-release (x86_64): pafr_0.0.2.tgz, r-oldrel (x86_64): pafr_0.0.2.tgz

Reverse dependencies:

Reverse depends:

minimapR

Linking:

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