genio: Genetics Input/Output Functions
Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.
| Version: | 1.1.2 |
| Imports: | readr (≥ 2.0.0), tibble, dplyr, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, BEDMatrix, snpStats, lobstr |
| Published: | 2023-01-06 |
| DOI: | 10.32614/CRAN.package.genio |
| Author: | Alejandro Ochoa |
| Maintainer: | Alejandro Ochoa <alejandro.ochoa at duke.edu> |
| BugReports: | https://github.com/OchoaLab/genio/issues |
| License: | GPL-3 |
| URL: | https://github.com/OchoaLab/genio |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | genio results |
Documentation:
| Reference manual: | genio.pdf |
| Vignettes: |
Read and write BED files with 'genio' |
Downloads:
| Package source: | genio_1.1.2.tar.gz |
| Windows binaries: | r-devel: genio_1.1.2.zip, r-release: genio_1.1.2.zip, r-oldrel: genio_1.1.2.zip |
| macOS binaries: | r-release (arm64): genio_1.1.2.tgz, r-oldrel (arm64): genio_1.1.2.tgz, r-release (x86_64): genio_1.1.2.tgz, r-oldrel (x86_64): genio_1.1.2.tgz |
| Old sources: | genio archive |
Reverse dependencies:
| Reverse imports: | jackstraw, lit, modACDC |
| Reverse suggests: | gcatest, lfa |
Linking:
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