admixr: An Interface for Running 'ADMIXTOOLS' Analyses
An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.
| Version: |
0.9.1 |
| Depends: |
R (≥ 3.6.0) |
| Imports: |
dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils |
| Suggests: |
covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse |
| Published: |
2020-07-03 |
| DOI: |
10.32614/CRAN.package.admixr |
| Author: |
Martin Petr  [aut,
cre] |
| Maintainer: |
Martin Petr <contact at bodkan.net> |
| BugReports: |
https://github.com/bodkan/admixr/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/bodkan/admixr |
| NeedsCompilation: |
no |
| SystemRequirements: |
ADMIXTOOLS suite of command-line utilities for
population genetics. See
<https://reich.hms.harvard.edu/software> for the most recent
installation instructions and further information. |
| Materials: |
README NEWS |
| CRAN checks: |
admixr results |
Documentation:
Downloads:
Reverse dependencies:
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