HLAtools: Toolkit for HLA Immunogenomics
A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
| Version: |
1.2.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
DescTools, dplyr, stringr, tibble, utils, xfun, fmsb |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2024-09-02 |
| DOI: |
10.32614/CRAN.package.HLAtools |
| Author: |
Livia Tran [aut],
Ryan Nickens [aut],
Leamon Crooms IV [aut],
Derek Pappas [aut],
Vinh Luu [ctb],
Josh Bredeweg [ctb],
Steven Mack  [aut,
cre] |
| Maintainer: |
Steven Mack <Steven.Mack at ucsf.edu> |
| License: |
GPL (≥ 3) |
| URL: |
<https://github.com/sjmack/HLAtools> |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
HLAtools results |
Documentation:
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