dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses
A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.
| Version: | 1.0.5 |
| Depends: | R (≥ 3.5.0) |
| Imports: | assertthat, dplyr, dynutils (≥ 1.0.10), ggplot2, ggraph (≥ 2.0), ggrepel, GillespieSSA2 (≥ 0.2.6), grDevices, grid, igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (≥ 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis |
| Suggests: | anndata, covr, dynwrap (≥ 1.2.0), R.rsp, rmarkdown, Seurat, SingleCellExperiment (≥ 1.5.3), SummarizedExperiment, testthat |
| Published: | 2022-10-12 |
| DOI: | 10.32614/CRAN.package.dyngen |
| Author: | Robrecht Cannoodt |
| Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: | https://github.com/dynverse/dyngen/issues |
| License: | MIT + file LICENSE |
| URL: | https://dyngen.dynverse.org, https://github.com/dynverse/dyngen |
| NeedsCompilation: | no |
| Citation: | dyngen citation info |
| Materials: | README NEWS |
| CRAN checks: | dyngen results |
Documentation:
| Reference manual: | dyngen.pdf |
| Vignettes: |
Getting started Installation instructions |
Downloads:
| Package source: | dyngen_1.0.5.tar.gz |
| Windows binaries: | r-devel: dyngen_1.0.5.zip, r-release: dyngen_1.0.5.zip, r-oldrel: dyngen_1.0.5.zip |
| macOS binaries: | r-release (arm64): dyngen_1.0.5.tgz, r-oldrel (arm64): dyngen_1.0.5.tgz, r-release (x86_64): dyngen_1.0.5.tgz, r-oldrel (x86_64): dyngen_1.0.5.tgz |
| Old sources: | dyngen archive |
Linking:
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