rrBLUP: Ridge Regression and Other Kernels for Genomic Selection

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Version:	4.6.3
Depends:	R (≥ 4.0)
Imports:	stats, graphics, grDevices, parallel
Published:	2023-12-10
DOI:	10.32614/CRAN.package.rrBLUP
Author:	Jeffrey Endelman
Maintainer:	Jeffrey Endelman <endelman at wisc.edu>
License:	GPL-3
URL:	<https://potatobreeding.cals.wisc.edu/software/>
NeedsCompilation:	no
Citation:	rrBLUP citation info
Materials:	NEWS
In views:	Agriculture, MixedModels
CRAN checks:	rrBLUP results

Documentation:

Reference manual:

rrBLUP.pdf

Downloads:

Package source:	rrBLUP_4.6.3.tar.gz
Windows binaries:	r-devel: rrBLUP_4.6.3.zip, r-release: rrBLUP_4.6.3.zip, r-oldrel: rrBLUP_4.6.3.zip
macOS binaries:	r-release (arm64): rrBLUP_4.6.3.tgz, r-oldrel (arm64): rrBLUP_4.6.3.tgz, r-release (x86_64): rrBLUP_4.6.3.tgz, r-oldrel (x86_64): rrBLUP_4.6.3.tgz
Old sources:	rrBLUP archive

Reverse dependencies:

Reverse imports:	BWGS, factReg, Ghat, GROAN, PopVar, RAINBOWR, STGS
Reverse suggests:	BG2, dartR, dartR.base, dartR.captive, dartR.spatial, GWAS.BAYES, MoBPS, polyRAD

Linking:

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