Summary:
This Pathway/Genome Database (PGDB) was generated by the PathoLogic
[1,
2] component of Pathway Tools software version 24.0 and MetaCyc
[3] version 24.0 on 09-Mar-2020 13:04:57.
Sequence Source: GCF_000018585.1
Taxonomic Lineage:
cellular organisms
NCBI Taxonomy ID: 131567
Rank: no rank
Lineage:
'>cellular organisms,
Bacteria <bacteria>
NCBI Taxonomy ID: 2
Rank: superkingdom
Lineage:
cellular organisms'>Bacteria <bacteria>,
Terrabacteria group
NCBI Taxonomy ID: 1783272
Rank: no rank
Lineage:
cellular organisms
Bacteria <bacteria>'>Terrabacteria group,
Cyanobacteriota/Melainabacteria group
NCBI Taxonomy ID: 1798711
Rank: no rank
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group'>Cyanobacteriota/Melainabacteria group,
Cyanobacteriota
NCBI Taxonomy ID: 1117
Rank: phylum
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group'>Cyanobacteriota,
Cyanophyceae
NCBI Taxonomy ID: 3028117
Rank: class
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group
Cyanobacteriota'>Cyanophyceae,
Synechococcales
NCBI Taxonomy ID: 1890424
Rank: order
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group
Cyanobacteriota
Cyanophyceae'>Synechococcales,
Prochlorococcaceae
NCBI Taxonomy ID: 2881426
Rank: family
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group
Cyanobacteriota
Cyanophyceae
Synechococcales'>Prochlorococcaceae,
Prochlorococcus
NCBI Taxonomy ID: 1218
Rank: genus
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group
Cyanobacteriota
Cyanophyceae
Synechococcales
Prochlorococcaceae'>Prochlorococcus,
Prochlorococcus marinus
NCBI Taxonomy ID: 1219
Rank: species
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group
Cyanobacteriota
Cyanophyceae
Synechococcales
Prochlorococcaceae
Prochlorococcus'>Prochlorococcus marinus,
Prochlorococcus marinus MIT 9211
NCBI Taxonomy ID: 93059
Rank: strain
Lineage:
cellular organisms
Bacteria <bacteria>
Terrabacteria group
Cyanobacteriota/Melainabacteria group
Cyanobacteriota
Cyanophyceae
Synechococcales
Prochlorococcaceae
Prochlorococcus
Prochlorococcus marinus'>Prochlorococcus marinus MIT 9211
Synonyms: Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211, Prochlorococcus marinus str. MIT 9211
Unification Links: BIOSAMPLE:SAMN00622972, NCBI BioProject:PRJNA224116, NCBI-Taxonomy:93059
| Organism or Sample Properties | |
|---|---|
| Annotation Provider: | NCBI RefSeq |
| Annotation Date: | 2020-02-17 |
| Annotation Pipeline: | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
| Annotation Pipeline Version: | 4.11 |
| Annotation Comment: | Best-placed reference protein set; GeneMarkS-2+ |
| Replicon | Total Genes | Protein Genes | RNA Genes | Pseudogenes | Size (bp) | NCBI Link |
|---|---|---|---|---|---|---|
| NC_009976 | 1,804 | 1,743 | 47 | 14 | 1,688,963 | NCBI-RefSeq:NC_009976 |
| Ortholog data available? | Yes |
| Genes: | 1,804 | ||
| Pathways: | 204 | ||
| Enzymatic Reactions: | 1,008 | ||
| Transport Reactions: | 25 | ||
| Polypeptides: | 1,747 | ||
| Protein Complexes: | 46 | ||
| Enzymes: | 554 | ||
| Transporters: | 93 | ||
| Compounds: | 733 | ||
| Transcription Units: | 1,253 | ||
| tRNAs: | 40 | ||
| Protein Features: | 2,775 | ||
| GO Terms: | 9,342 |
Genetic Code Number:
11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
PGDB Unique ID: 220B
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Page generated by Pathway Tools version 28.5 (software by SRI International) on Wed Dec 25, 2024, BIOCYC15A.