Exploring molecular evolution of Rubisco in C3 and CAM Orchidaceae and Bromeliaceae (Q92857186)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31969115%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

title

Exploring molecular evolution of Rubisco in C3 and CAM Orchidaceae and Bromeliaceae (English)

1 reference

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2 May 2020

1 reference

Bromeliaceae

1 reference

1 reference

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2 May 2020

author name string

Carmen Hermida-Carrera

1 reference

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2 May 2020

Mario A Fares

1 reference

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2 May 2020

Marcel Font-Carrascosa

1 reference

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2 May 2020

Maxim V Kapralov

1 reference

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2 May 2020

Marcus A Koch

1 reference

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2 May 2020

Arnau Mir

1 reference

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2 May 2020

Arántzazu Molins

1 reference

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2 May 2020

Miquel Ribas-Carbó

1 reference

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2 May 2020

Jairo Rocha

1 reference

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2 May 2020

publication date

22 January 2020

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2 May 2020

published in

BMC Evolutionary Biology

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2 May 2020

volume

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2 May 2020

issue

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2 May 2020

page(s)

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describes a project that uses

2 May 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6977233/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Altitudinal changes in the incidence of crassulacean acid metabolism in vascular epiphytes and related life forms in Papua New Guinea

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Crassulacean acid metabolism in australian vascular epiphytes and some related species

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AQUATIC PLANT SPECIATION AFFECTED BY DIVERSIFYING SELECTION OF ORGANELLE DNA REGIONS1

11 February 2021

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Kranz and single-cell forms of C4 plants in the subfamily Suaedoideae show kinetic C4 convergence for PEPC and Rubisco with divergent amino acid substitutions

11 February 2021

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Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism

11 February 2021

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Environmentally driven evolution of Rubisco and improved photosynthesis and growth within the C3 genus Limonium (Plumbaginaceae).

11 February 2021

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Expanding knowledge of the Rubisco kinetics variability in plant species: environmental and evolutionary trends.

11 February 2021

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Adaptive radiation, correlated and contingent evolution, and net species diversification in Bromeliaceae

11 February 2021

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Unusual small subunit that is not expressed in photosynthetic cells alters the catalytic properties of rubisco in rice

11 February 2021

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11 February 2021

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Can phenotypic plasticity in Rubisco performance contribute to photosynthetic acclimation?

11 February 2021

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Modelling the reaction mechanism of ribulose-1,5-bisphosphate carboxylase/oxygenase and consequences for kinetic parameters

11 February 2021

1 reference

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Rubisco evolution in C₄ eudicots: an analysis of Amaranthaceae sensu lato

11 February 2021

1 reference

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An integrated approach to crop genetic improvement

11 February 2021

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Adaptive signals in algal Rubisco reveal a history of ancient atmospheric carbon dioxide

11 February 2021

1 reference

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Coevolution of amino acid residues in the key photosynthetic enzyme Rubisco

11 February 2021

1 reference

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A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

The photosynthetic plasticity of crassulacean acid metabolism: an evolutionary innovation for sustainable productivity in a changing world.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Molecular evolution of rbcL in three gymnosperm families: identifying adaptive and coevolutionary patterns

11 February 2021

1 reference

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Crassulacean acid metabolism in the ZZ plant, Zamioculcas zamiifolia (Araceae).

11 February 2021

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Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: insights from an eight-locus plastid phylogeny

11 February 2021

1 reference

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Functional incorporation of sorghum small subunit increases the catalytic turnover rate of Rubisco in transgenic rice

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

11 February 2021

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Contemporaneous and recent radiations of the world's major succulent plant lineages

11 February 2021

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Changes in Rubisco Kinetics during the Evolution of C4 Photosynthesis in Flaveria (Asteraceae) Are Associated with Positive Selection on Genes Encoding the Enzyme

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Statistical properties of the branch-site test of positive selection

11 February 2021

1 reference

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Advancing our understanding and capacity to engineer nature's CO2-sequestering enzyme, Rubisco

11 February 2021

1 reference

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Complex evolutionary transitions and the significance of c(3)-c(4) intermediate forms of photosynthesis in Molluginaceae

11 February 2021

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The origins of C4 grasslands: integrating evolutionary and ecosystem science.

11 February 2021

1 reference

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Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape

11 February 2021

1 reference

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Molecular adaptation of rbcL in the heterophyllous aquatic plant Potamogeton

11 February 2021

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Crassulacean acid metabolism and epiphytism linked to adaptive radiations in the Orchidaceae

11 February 2021

1 reference

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Adaptive evolution of rbcL in Conocephalum (Hepaticae, bryophytes)

11 February 2021

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Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis

11 February 2021

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On the nature of facultative and constitutive CAM: environmental and developmental control of CAM expression during early growth of Clusia, Kalanchöe, and Opuntia

11 February 2021

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Leaf succulence determines the interplay between carboxylase systems and light use during Crassulacean acid metabolism in Kalanchöe species

11 February 2021

1 reference

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The biochemistry of Rubisco in Flaveria.

11 February 2021

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GEIGER: investigating evolutionary radiations

11 February 2021

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Mesophyll conductance to CO2: current knowledge and future prospects

11 February 2021

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Widespread positive selection in the photosynthetic Rubisco enzyme

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

PAML 4: phylogenetic analysis by maximum likelihood

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

CAPS: coevolution analysis using protein sequences.

11 February 2021

1 reference

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Variations in the Specific Activity of Ribulose-1,5-bisphosphate Carboxylase between Species Utilizing Differing Photosynthetic Pathways

11 February 2021

1 reference

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Variations in Kinetic Properties of Ribulose-1,5-bisphosphate Carboxylases among Plants

11 February 2021

1 reference

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Variations in K(m)(CO(2)) of Ribulose-1,5-bisphosphate Carboxylase among Grasses

11 February 2021

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Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized

11 February 2021

1 reference

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A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

The effects of salinity, crassulacean acid metabolism and plant age on the carbon isotope composition of Mesembryanthemum crystallinum L., a halophytic C(3)-CAM species

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Bayes empirical bayes inference of amino acid sites under positive selection

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Faster Rubisco is the key to superior nitrogen-use efficiency in NADP-malic enzyme relative to NAD-malic enzyme C4 grasses

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

MAFFT version 5: improvement in accuracy of multiple sequence alignment

11 February 2021

1 reference

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Ecophysiology of Crassulacean Acid Metabolism (CAM)

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Multiple origins of crassulacean acid metabolism and the epiphytic habit in the Neotropical family Bromeliaceae

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

APE: Analyses of Phylogenetics and Evolution in R language

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

CO(2)-concentrating: consequences in crassulacean acid metabolism

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

How closely do the delta(13)C values of Crassulacean Acid metabolism plants reflect the proportion of CO(2) fixed during day and night?

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Crassulacean acid metabolism: plastic, fantastic.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Crassulacean acid metabolism. A plastic photosynthetic adaptation to arid environments

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6977233

10.1186/S12862-019-1551-8

11 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31969115%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31969115%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

PubMed publication ID

31969115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31969115%20AND%20SRC:MED&resulttype=core&format=json