Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species (Q95778916)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18405392%20AND%20SRC:MED&resulttype=core&format=json

30 May 2020

title

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species (English)

1 reference

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30 May 2020

Stephan Heeb

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ORCID Public Data File 2021

Dieter Haas

object named as

Dieter Haas

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30 May 2020

Nicolas González

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30 May 2020

Claudio Valverde

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30 May 2020

Elisabeth Kay

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30 May 2020

Cornelia Reimmann

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30 May 2020

Thomas Junier

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30 May 2020

publication date

13 April 2008

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30 May 2020

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30 May 2020

volume

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30 May 2020

page(s)

167

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Identification of small RNAs in diverse bacterial species

30 May 2020

cites work

1 reference

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The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase.

10 February 2021

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Two GacA-dependent small RNAs modulate the quorum-sensing response in Pseudomonas aeruginosa

10 February 2021

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Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

10 February 2021

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Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis

10 February 2021

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Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0

10 February 2021

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CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae.

10 February 2021

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Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.

10 February 2021

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10 February 2021

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Role of the stress sigma factor RpoS in GacA/RsmA-controlled secondary metabolism and resistance to oxidative stress in Pseudomonas fluorescens CHA0.

10 February 2021

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Posttranscriptional repression of GacS/GacA-controlled genes by the RNA-binding protein RsmE acting together with RsmA in the biocontrol strain Pseudomonas fluorescens CHA0.

10 February 2021

1 reference

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The small RNA regulators of Escherichia coli: roles and mechanisms*

10 February 2021

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10 February 2021

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Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis

10 February 2021

1 reference

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Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1.

10 February 2021

1 reference

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A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

10 February 2021

1 reference

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RsmY, a small regulatory RNA, is required in concert with RsmZ for GacA-dependent expression of biocontrol traits in Pseudomonas fluorescens CHA0

10 February 2021

1 reference

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RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

10 February 2021

1 reference

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Acetylornithinase of Escherichia coli: partial purification and some properties

10 February 2021

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

10 February 2021

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The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

10 February 2021

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Nucleotides from -16 to -12 determine specific promoter recognition by bacterial sigmaS-RNA polymerase.

10 February 2021

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A survey of small RNA-encoding genes in Escherichia coli

10 February 2021

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Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

10 February 2021

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An mRNA structure that controls gene expression by binding FMN

10 February 2021

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Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation

10 February 2021

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Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0

10 February 2021

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10 February 2021

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The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa

10 February 2021

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Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

10 February 2021

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Identification of novel small RNAs using comparative genomics and microarrays

10 February 2021

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Prediction of transcription terminators in bacterial genomes.

10 February 2021

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A regulatory RNA (PrrB RNA) modulates expression of secondary metabolite genes in Pseudomonas fluorescens F113

10 February 2021

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10 February 2021

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TatD Is a Cytoplasmic Protein with DNase Activity

10 February 2021

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Autoinduction of 2,4-diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate and pyoluteorin

10 February 2021

1 reference

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Global GacA-steered control of cyanide and exoprotease production in Pseudomonas fluorescens involves specific ribosome binding sites

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375449

Compilation and analysis of sigma(54)-dependent promoter sequences

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375449

RpoS-dependent stress tolerance in Pseudomonas aeruginosa.

10 February 2021

1 reference

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Small RNAs in Escherichia coli.

10 February 2021

1 reference

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3′ Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

10 February 2021

1 reference

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The global activator GacA of Pseudomonas aeruginosa PAO positively controls the production of the autoinducer N-butyryl-homoserine lactone and the formation of the virulence factors pyocyanin, cyanide, and lipase

10 February 2021

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375449

(+)-(S)-dihydroaeruginoic acid, an inhibitor of Septoria tritici and other phytopathogenic fungi and bacteria, produced by Pseudomonas fluorescens

10 February 2021

1 reference

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A one-tube plasmid DNA mini-preparation suitable for sequencing

10 February 2021

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The 4.5S RNA gene from Pseudomonas aeruginosa

10 February 2021

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High efficiency electroporation of Pseudomonas aeruginosa using frozen cell suspensions

10 February 2021

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Global control in Pseudomonas fluorescens mediating antibiotic synthesis and suppression of black root rot of tobacco

10 February 2021

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10 February 2021

Identifiers

DOI

10.1186/1471-2164-9-167

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18405392%20AND%20SRC:MED&resulttype=core&format=json

30 May 2020

1 reference

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30 May 2020

PubMed publication ID

18405392

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18405392%20AND%20SRC:MED&resulttype=core&format=json