Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy (Q83200523)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Masatoshi Yokokawa

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Shige H Yoshimura

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Kunio Takeyasu

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

publication date

25 February 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

volume

110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

page(s)

682-688

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Atomic force microscopy proposes a 'kiss and pull' mechanism for enhancer function. off

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Elastic origin of chiral selection in DNA wrapping

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Atomic force microscopy proposes a novel model for stem-loop structure that binds a heat shock protein in the Staphylococcus aureus HSP70 operon.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Unusual DNA structures, chromatin and transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Oligonucleotide-mediated modulation of mammalian gene expression.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Enzyme-mediated DNA looping

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

DNA phase transition promoted by replication initiator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Chromatin Structure: A Repeating Unit of Histones and DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Electron microscopic and biochemical evidence that chromatin structure is a repeating unit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Crystal structure of the nucleosome core particle at 2.8 Å resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Nucleosome arrays inhibit both initiation and elongation of transcripts by bacteriophage T7 RNA polymerase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Mobile nucleosomes--a general behavior

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Mobility of positioned nucleosomes on 5 S rDNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Linker histones H1 and H5 prevent the mobility of positioned nucleosomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Histone core slips along DNA and prefers positioning at the chain end

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Effect of force on mononucleosomal dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Rapid spontaneous accessibility of nucleosomal DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Stopped-flow fluorescence resonance energy transfer for analysis of nucleosome dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Escherichia coli RNA polymerase activity observed using atomic force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

A high-speed atomic force microscope for studying biological macromolecules.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Real-time imaging of DNA-streptavidin complex formation in solution using a high-speed atomic force microscope.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Removal of histone tails from nucleosome dissects the physical mechanisms of salt-induced aggregation, linker histone H1-induced compaction, and 30-nm fiber formation of the nucleosome array

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Aggregation of nucleosomes by divalent cations.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Topoisomerase II, scaffold component, promotes chromatin compaction in vitro in a linker-histone H1-dependent manner

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Linker histone H1 per se can induce three-dimensional folding of chromatin fiber.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Imaging ROMK1 inwardly rectifying ATP-sensitive K+ channel protein using atomic force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Dynamics of nucleosomes revealed by time-lapse atomic force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Histone chaperones: 30 years from isolation to elucidation of the mechanisms of nucleosome assembly and disassembly

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Histone variants: deviants?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Repair of UV lesions in nucleosomes--intrinsic properties and remodeling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

Histone release during transcription: acetylation stabilizes the interaction of the H2A-H2B dimer with the H3-H4 tetramer in nucleosomes that are on highly positively coiled DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

AFM imaging of protein movements: histone H2A-H2B release during nucleosome remodeling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.ULTRAMIC.2010.02.032

10.1016/J.ULTRAMIC.2010.02.032

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20236766%20AND%20SRC:MED&resulttype=core&format=json