The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisation (Q81489174)

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scientific article published on 24 October 2007

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English	The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisation	scientific article published on 24 October 2007

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Europe PubMed Central

PubMed publication ID

17957399

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

title

The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisation (English)

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Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

author name string

Timothy Hughes

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1

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Europe PubMed Central

PubMed publication ID

17957399

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

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9 January 2020

David A Liberles

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2

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Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

publication date

24 October 2007

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Europe PubMed Central

PubMed publication ID

17957399

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

published in

Journal of Molecular Evolution

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stated in

Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

volume

65

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Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

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9 January 2020

issue

5

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Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

page(s)

574-588

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Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

cites work

Preservation of duplicate genes by complementary, degenerative mutations

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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A systematic search for positive selection in higher plants (Embryophytes)

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Maximum-likelihood phylogenetic analysis under a covarion-like model.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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The genomic rate of adaptive evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Tertiary Windowing to Detect Positive Diversifying Selection

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12 December 2020

based on heuristic

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Evolution of duplicate genes in a tetraploid animal, Xenopus laevis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Episodic adaptive evolution of primate lysozymes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Ensembl 2006.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Heterotachy, an important process of protein evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional analysis of gene duplications in Saccharomyces cerevisiae

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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The evolutionary demography of duplicate genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Comparative linkage maps of the rice and maize genomes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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The probability of duplicate gene preservation by subfunctionalization

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Evaluation of models for the evolution of protein sequences and functions under structural constraint

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probabilistic reconstruction of ancestral protein sequences

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian gene evolution: nucleotide sequence divergence between mouse and rat

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Are all fishes ancient polyploids?

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive evolution of transcription factor binding sites

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary fate and consequences of duplicate genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subfunctionalization of duplicated genes as a transition state to neofunctionalization

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Placental mammal diversification and the Cretaceous-Tertiary boundary

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

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The gain and loss of genes during 600 million years of vertebrate evolution

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17957399

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12 December 2020

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Identifiers

DOI

10.1007/S00239-007-9041-9

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

Dimensions Publication ID

1004238879

0 references

PubMed publication ID

17957399

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17957399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17957399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 January 2020

 

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