Axon-Seq Decodes the Motor Axon Transcriptome and Its Modulation in Response to ALS (Q60303934)

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scientific article published on 01 December 2018

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English	Axon-Seq Decodes the Motor Axon Transcriptome and Its Modulation in Response to ALS	scientific article published on 01 December 2018

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6294264

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title

Axon-Seq Decodes the Motor Axon Transcriptome and Its Modulation in Response to ALS (English)

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6294264

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main subject

transcriptome

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amyotrophic lateral sclerosis

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author

Nigel Kee

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4

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6294264

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author name string

Jik Nijssen

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1

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6294264

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Julio Aguila

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2

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6294264

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Rein Hoogstraaten

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3

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Eva Hedlund

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5

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6294264

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language of work or name

English

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publication date

1 December 2018

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6294264

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published in

Stem Cell Reports

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6294264

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volume

11

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issue

6

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6294264

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page(s)

1565-1578

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13 April 2020

describes a project that uses

DESeq2

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DESeq2

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Local control of neurite development by nerve growth factor

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Selective localization of messenger RNA for cytoskeletal protein MAP2 in dendrites

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Axonal transport of the cytoplasmic matrix.

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Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis

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PubMed

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12 December 2020

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Subcellular localization of tau mRNA in differentiating neuronal cell culture: implications for neuronal polarity.

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Neurofilament accumulation at the motor endplate and lack of axonal sprouting in a spinal muscular atrophy mouse model

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Directed differentiation of embryonic stem cells into motor neurons

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Organization and translation of mRNA in sympathetic axons

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The chemotactic effect of mixtures of antibody and antigen on polymorphonuclear leucocytes

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Axoplasmic importins enable retrograde injury signaling in lesioned nerve.

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Amyotrophic lateral sclerosis is a distal axonopathy: evidence in mice and man

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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A microfluidic culture platform for CNS axonal injury, regeneration and transport

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Slow progressive degeneration of nigral dopaminergic neurons in postnatal Engrailed mutant mice

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PubMed

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Gating of Sema3E/PlexinD1 signaling by neuropilin-1 switches axonal repulsion to attraction during brain development.

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Intra-axonal translation and retrograde trafficking of CREB promotes neuronal survival

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TDP-43 mutations in familial and sporadic amyotrophic lateral sclerosis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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Hox repertoires for motor neuron diversity and connectivity gated by a single accessory factor, FoxP1.

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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Mitochondrial biogenesis in the axons of vertebrate peripheral neurons

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Experience-dependent transfer of Otx2 homeoprotein into the visual cortex activates postnatal plasticity

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30540963

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FARP1 promotes the dendritic growth of spinal motor neuron subtypes through transmembrane Semaphorin6A and PlexinA4 signaling

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Mutations in the FUS/TLS gene on chromosome 16 cause familial amyotrophic lateral sclerosis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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Mutations in FUS, an RNA processing protein, cause familial amyotrophic lateral sclerosis type 6

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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The mouse F3/contactin glycoprotein: structural features, functional properties and developmental significance of its regulated expression.

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PubMed

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12 December 2020

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Extracellular Engrailed participates in the topographic guidance of retinal axons in vivo

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12 December 2020

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Axon growth and guidance genes identify nascent, immature, and mature olfactory sensory neurons

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Npn-1 contributes to axon-axon interactions that differentially control sensory and motor innervation of the limb

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Otx2 promotes the survival of damaged adult retinal ganglion cells and protects against excitotoxic loss of visual acuity in vivo.

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Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Axonal transcription factors signal retrogradely in lesioned peripheral nerve

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Local translation of extranuclear lamin B promotes axon maintenance

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Intra-axonal translation of SMAD1/5/8 mediates retrograde regulation of trigeminal ganglia subtype specification

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Molecular cooperativity of drebrin1-300 binding and structural remodeling of F-actin

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Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons

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The DEAH-box helicase DHX36 mediates dendritic localization of the neuronal precursor-microRNA-134.

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ALS-associated mutations in FUS disrupt the axonal distribution and function of SMN.

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https://pubmed.ncbi.nlm.nih.gov/30540963

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RNA-binding protein Hermes/RBPMS inversely affects synapse density and axon arbor formation in retinal ganglion cells in vivo

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Software for computing and annotating genomic ranges

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Subcellular transcriptomics-dissection of the mRNA composition in the axonal compartment of sensory neurons

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The central dogma decentralized: new perspectives on RNA function and local translation in neurons

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YB-1 protein: functions and regulation

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based on heuristic

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Semaphorin 3A signaling through neuropilin-1 is an early trigger for distal axonopathy in the SOD1G93A mouse model of amyotrophic lateral sclerosis

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https://pubmed.ncbi.nlm.nih.gov/30540963

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Alternative forms of Y-box binding protein 1 and YB-1 mRNA

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An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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Subcellular transcriptome alterations in a cell culture model of spinal muscular atrophy point to widespread defects in axonal growth and presynaptic differentiation

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https://pubmed.ncbi.nlm.nih.gov/30540963

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The phenotypic variability of amyotrophic lateral sclerosis

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https://pubmed.ncbi.nlm.nih.gov/30540963

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HISAT: a fast spliced aligner with low memory requirements

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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Mahogunin Ring Finger-1 (MGRN1), a Multifaceted Ubiquitin Ligase: Recent Unraveling of Neurobiological Mechanisms

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https://pubmed.ncbi.nlm.nih.gov/30540963

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based on heuristic

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Whole transcriptome profiling reveals the RNA content of motor axons

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https://pubmed.ncbi.nlm.nih.gov/30540963

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12 December 2020

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Cross-disease comparison of amyotrophic lateral sclerosis and spinal muscular atrophy reveals conservation of selective vulnerability but differential neuromuscular junction pathology.

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Mahogunin ring finger 1 confers cytoprotection against mutant SOD1 aggresomes and is defective in an ALS mouse model

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Dynamic Axonal Translation in Developing and Mature Visual Circuits

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Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling

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NEK1 variants confer susceptibility to amyotrophic lateral sclerosis

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Dual Function of NRP1 in Axon Guidance and Subcellular Target Recognition in Cerebellum

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Association of Cell Adhesion Molecules Contactin-6 and Latrophilin-1 Regulates Neuronal Apoptosis

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Molecular determinants of cytochrome C oxidase IV mRNA axonal trafficking.

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ALS Along the Axons - Expression of Coding and Noncoding RNA Differs in Axons of ALS models.

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Messenger RNAs localized to distal projections of human stem cell derived neurons

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Neurturin is a PGC-1α1-controlled myokine that promotes motor neuron recruitment and neuromuscular junction formation

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Impaired DNA damage response signaling by FUS-NLS mutations leads to neurodegeneration and FUS aggregate formation.

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Identifiers

DOI

10.1016/J.STEMCR.2018.11.005

1 reference

stated in

Europe PubMed Central

PMC publication ID

6294264

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30540963%20AND%20SRC:MED&resulttype=core&format=json

retrieved

13 April 2020

PMC publication ID

6294264

1 reference

stated in

Europe PubMed Central

PMC publication ID

6294264

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30540963%20AND%20SRC:MED&resulttype=core&format=json

retrieved

13 April 2020

PubMed publication ID

30540963

1 reference

stated in

Europe PubMed Central

PMC publication ID

6294264

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30540963%20AND%20SRC:MED&resulttype=core&format=json

retrieved

13 April 2020

 

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