Whole Genome Sequencing and Metabolomic Study of Cave Isolates ICC1 and ICC4 (Q64263811)

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scientific article published on 10 May 2019

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English	Whole Genome Sequencing and Metabolomic Study of Cave Isolates ICC1 and ICC4	scientific article published on 10 May 2019

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scholarly article

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Europe PubMed Central

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6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

title

Whole Genome Sequencing and Metabolomic Study of Cave Streptomyces Isolates ICC1 and ICC4 (English)

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Europe PubMed Central

PMC publication ID

6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

main subject

metabolome

0 references

whole genome sequencing

0 references

Streptomyces

1 reference

inferred from

reverse claim

Nordentatin

1 reference

inferred from

reverse claim

2',5'-DIMETHOXYFLAVONE

1 reference

inferred from

reverse claim

author

Soumya Ghosh

series ordinal

2

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Europe PubMed Central

PMC publication ID

6524458

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28 April 2020

author name string

Jessica Thandara Gosse

series ordinal

1

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Europe PubMed Central

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6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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Amanda Sproule

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3

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6524458

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28 April 2020

David Overy

series ordinal

4

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Europe PubMed Central

PMC publication ID

6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

Naowarat Cheeptham

series ordinal

5

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Europe PubMed Central

PMC publication ID

6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

Christopher N Boddy

series ordinal

6

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Europe PubMed Central

PMC publication ID

6524458

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language of work or name

English

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publication date

10 May 2019

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6524458

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28 April 2020

full work available at URL

https://www.frontiersin.org/articles/10.3389/fmicb.2019.01020/pdf

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Unpaywall

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19 March 2024

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https://api.unpaywall.org/v2/10.3389/fmicb.2019.01020?email=unpaywall_01@example.com

published in

Frontiers in Microbiology

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Europe PubMed Central

PMC publication ID

6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

volume

10

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Europe PubMed Central

PMC publication ID

6524458

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

page(s)

1020

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Europe PubMed Central

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6524458

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28 April 2020

copyright license

Creative Commons Attribution 4.0 International

start time

10 May 2019

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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online access status

open access

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Unpaywall

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19 March 2024

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https://api.unpaywall.org/v2/10.3389/fmicb.2019.01020?email=unpaywall_01@example.com

access restriction status

open access

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Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

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antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

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Actinobacterial diversity in limestone deposit sites in Hundung, Manipur (India) and their antimicrobial activities

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Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals

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Marinobacter subterrani, a genetically tractable neutrophilic Fe(II)-oxidizing strain isolated from the Soudan Iron Mine

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Microbially induced corrosion of carbon steel in deep groundwater environment.

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Minimum Information about a Biosynthetic Gene cluster.

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inferred from PubMed ID database lookup

Metalliferous Biosignatures for Deep Subsurface Microbial Activity

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based on heuristic

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Deep subsurface mine stalactites trap endemic fissure fluid Archaea, Bacteria, and Nematoda possibly originating from ancient seas

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Extracting Accurate Precursor Information for Tandem Mass Spectra by RawConverter

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Nitrate and ammonia as nitrogen sources for deep subsurface microorganisms

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PubMed

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Microbiome composition and geochemical characteristics of deep subsurface high-pressure environment, Pyhäsalmi mine Finland.

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based on heuristic

inferred from PubMed ID database lookup

Actinobacteria Isolated from an Underground Lake and Moonmilk Speleothem from the Biggest Conglomeratic Karstic Cave in Siberia as Sources of Novel Biologically Active Compounds

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

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based on heuristic

inferred from PubMed ID database lookup

BAGEL: a computational framework for identifying essential genes from pooled library screens.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

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based on heuristic

inferred from PubMed ID database lookup

Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/31134037

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based on heuristic

inferred from PubMed ID database lookup

The evolution of genome mining in microbes - a review.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/31134037

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based on heuristic

inferred from PubMed ID database lookup

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The cave microbiome as a source for drug discovery: Reality or pipe dream?

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Western Bats as a Reservoir of Novel Streptomyces Species with Antifungal Activity

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dominant bacterial phyla in caves and their predicted functional roles in C and N cycle

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Simple Defined Medium for the Production of True Diketopiperazines in Xylella fastidiosa and Their Identification by Ultra-Fast Liquid Chromatography-Electrospray Ionization Ion Trap Mass Spectrometry

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assessment of the Potential Role of Streptomyces in Cave Moonmilk Formation.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-Throughput Sequencing Analysis of the Actinobacterial Spatial Diversity in Moonmilk Deposits.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/31134037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cure from the cave: volcanic cave actinomycetes and their potential in drug discovery

1 reference

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COCI

retrieved

12 April 2024

reference URL

https://opencitations.net/index/api/v1/references/10.3389/FMICB.2019.01020

Identifiers

DOI

10.3389/FMICB.2019.01020

1 reference

stated in

Europe PubMed Central

PMC publication ID

6524458

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 April 2020

PMC publication ID

6524458

1 reference

stated in

Europe PubMed Central

PMC publication ID

6524458

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 April 2020

PubMed publication ID

31134037

1 reference

stated in

Europe PubMed Central

PMC publication ID

6524458

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31134037%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 April 2020

 

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