Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation (Q64262168)

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scholarly article by Ricardo J Miragaia et al published 19 February 2019 in Immunity

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English	Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation	scholarly article by Ricardo J Miragaia et al published 19 February 2019 in Immunity

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instance of

scholarly article

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title

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation (English)

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main subject

immunology

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infectious disease

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inferred from title

single cell transcriptomics

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stated in

A curated database reveals trends in single-cell transcriptomics

reference URL

https://www.nxn.se/single-cell-studies/data.tsv

retrieved

7 February 2021

author

Xi Chen

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Xi Chen

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9

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Thomas Krausgruber

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Thomas Krausgruber

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12

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Sarah Teichmann

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16

object named as

Sarah A Teichmann

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Fiona Powrie

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15

object named as

Fiona Powrie

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Laura Jardine

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4

object named as

Laura Jardine

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Tomás Gomes

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2

object named as

Tomás Gomes

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Muzlifah Haniffa

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14

object named as

Muzlifah Haniffa

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Ricardo J Miragaia

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1

object named as

Ricardo J Miragaia

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author name string

Agnieszka Chomka

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3

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Angela Riedel

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5

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Ahmed N Hegazy

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6

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Natasha Whibley

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7

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Andrea Tucci

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8

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Ida Lindeman

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10

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Guy Emerton

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11

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Jacqueline Shields

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13

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language of work or name

English

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publication date

19 February 2019

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published in

Immunity

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volume

50

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issue

2

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page(s)

493-504.e7

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describes a project that uses

10x Genomics Chromium

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stated in

A curated database reveals trends in single-cell transcriptomics

reference URL

https://www.nxn.se/single-cell-studies/data.tsv

retrieved

7 February 2021

SMART-Seq

1 reference

stated in

A curated database reveals trends in single-cell transcriptomics

reference URL

https://www.nxn.se/single-cell-studies/data.tsv

retrieved

7 February 2021

Jupyter notebook file

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stated in

PubMed Central

RStudio

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stated in

Europe PubMed Central

retrieved

18 June 2022

reference URL

https://europepmc.org/article/PMC/6382439

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inferred from PubMed Central ID database lookup

scikit-learn

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scikit-learn

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

scikit-learn

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cites work

Adhesion between epithelial cells and T lymphocytes mediated by E-cadherin and the alpha E beta 7 integrin

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Virgin alpha beta and gamma delta T cells recirculate extensively through peripheral tissues and skin during normal development of the fetal immune system.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Naturally arising CD4+ regulatory t cells for immunologic self-tolerance and negative control of immune responses

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Reciprocal developmental pathways for the generation of pathogenic effector TH17 and regulatory T cells

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Characterization of Foxp3+CD4+CD25+ and IL-10-Secreting CD4+CD25+ T Cells during Cure of Colitis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

based on heuristic

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Regulatory T cells dynamically control the primary immune response to foreign antigen

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Regulatory lymphocytes and intestinal inflammation.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bidirectional homing of Tregs between the skin and lymph nodes

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Phenotypical and functional specialization of FOXP3+ regulatory T cells

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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The transcription factors Blimp-1 and IRF4 jointly control the differentiation and function of effector regulatory T cells

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

IL-23-responsive innate lymphoid cells are increased in inflammatory bowel disease

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulatory T cells: mechanisms of differentiation and function

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GPR15-mediated homing controls immune homeostasis in the large intestine mucosa

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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An inherently bifunctional subset of Foxp3+ T helper cells is controlled by the transcription factor eos.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

Tumor-infiltrating lymphocytes in colorectal tumors display a diversity of T cell receptor sequences that differ from the T cells in adjacent mucosal tissue

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

Controlling the frontier: regulatory T-cells and intestinal homeostasis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Full-length RNA-seq from single cells using Smart-seq2.

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Homeostatic control of regulatory T cell diversity.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

based on heuristic

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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The alarmin IL-33 promotes regulatory T-cell function in the intestine

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Controlling the fire--tissue-specific mechanisms of effector regulatory T-cell homing.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue-resident regulatory T cells.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Spatial reconstruction of single-cell gene expression data

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

Computational assignment of cell-cycle stage from single-cell transcriptome data

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

MUCOSAL IMMUNOLOGY. The microbiota regulates type 2 immunity through RORγt⁺ T cells

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

MUCOSAL IMMUNOLOGY. Individual intestinal symbionts induce a distinct population of RORγ⁺ regulatory T cells.

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The IL-33/ST2 axis is specifically required for development of adipose tissue-resident regulatory T cells

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Early-life compartmentalization of human T cell differentiation and regulatory function in mucosal and lymphoid tissues

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

T cell fate and clonality inference from single-cell transcriptomes

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tissue Tregs

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tumor-induced stromal reprogramming drives lymph node transformation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulatory T Cells Exhibit Distinct Features in Human Breast Cancer

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

switchde: inference of switch-like differential expression along single-cell trajectories

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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Salmon provides fast and bias-aware quantification of transcript expression

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resident memory T cells in the skin mediate durable immunity to melanoma.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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The TNF Receptor Superfamily-NF-κB Axis Is Critical to Maintain Effector Regulatory T Cells in Lymphoid and Non-lymphoid Tissues

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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Detecting Activated Cell Populations Using Single-Cell RNA-Seq

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stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RORα-expressing T regulatory cells restrain allergic skin inflammation.

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stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

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12 December 2020

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inferred from PubMed ID database lookup

TCR Transgenic Mice Reveal Stepwise, Multi-site Acquisition of the Distinctive Fat-Treg Phenotype

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

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RNA velocity of single cells

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30737144

retrieved

12 December 2020

based on heuristic

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Identifiers

DOI

10.1016/J.IMMUNI.2019.01.001

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PMC publication ID

6382439

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PubMed publication ID

30737144

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