MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons (Q64120900)

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English	MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons	No description defined

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instance of

scholarly article

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title

MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons (English)

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author

Ikuo Uchiyama

series ordinal

1

object named as

Ikuo Uchiyama

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author name string

Motohiro Mihara

series ordinal

2

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Hiroyo Nishide

series ordinal

3

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Hirokazu Chiba

series ordinal

4

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Masaki Kato

series ordinal

5

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language of work or name

English

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publication date

8 January 2019

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published in

Nucleic Acids Research

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volume

47

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issue

D1

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page(s)

D382-D389

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copyright license

Creative Commons Attribution 4.0 International

start time

20 November 2018

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stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Identification of common molecular subsequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MBGD: microbial genome database for comparative analysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Orthology prediction at scalable resolution by phylogenetic tree analysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

OrthoDB: the hierarchical catalog of eukaryotic orthologs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple genome alignment for identifying the core structure among moderately related microbial genomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

OGO: an ontological approach for integrating knowledge about orthology.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Search and clustering orders of magnitude faster than BLAST

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accelerated Profile HMM Searches

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MBGD update 2013: the microbial genome database for exploring the diversity of microbial world

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring hierarchical orthologous groups from orthologous gene pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hieranoid: hierarchical orthology inference

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Orthology Ontology: development and applications

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RefSeq: an update on prokaryotic genome annotation and curation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30462302

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKY1054

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DBLP publication ID

journals/nar/UchiyamaMNCK19

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

6324027

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PubMed publication ID

30462302

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