The effect of topology on the structure and free energy landscape of DNA kissing complexes. (Q53371879)

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5 February 2020

title

The effect of topology on the structure and free energy landscape of DNA kissing complexes (English)

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Alexander Hudson

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language of work or name

English

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publication date

1 June 2012

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Journal of Chemical Physics

5 February 2020

published in

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volume

136

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issue

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page(s)

215102

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Nucleic acid junctions and lattices

5 February 2020

cites work

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21 January 2018

DNA in a material world

1 reference

Nanomaterials based on DNA

21 January 2018

1 reference

21 January 2018

1 reference

Exceptionally stable nucleic acid hairpins

21 January 2018

1 reference

Folded DNA in action: hairpin formation and biological functions in prokaryotes.

21 January 2018

1 reference

Molecular biology: hairpins at split ends in DNA.

21 January 2018

1 reference

Structure and dynamics of the DNA hairpins formed by tandemly repeated CTG triplets associated with myotonic dystrophy

21 January 2018

1 reference

The origin of genetic instability in CCTG repeats

21 January 2018

1 reference

Triggered amplification by hybridization chain reaction

21 January 2018

1 reference

Topological constraints in nucleic acid hybridization kinetics

21 January 2018

1 reference

DNA hairpins: fuel for autonomous DNA devices

21 January 2018

1 reference

Coordinated chemomechanical cycles: a mechanism for autonomous molecular motion.

21 January 2018

1 reference

Programming biomolecular self-assembly pathways

21 January 2018

1 reference

A Programmable Molecular Robot

21 January 2018

1 reference

DNA nanotweezers studied with a coarse-grained model of DNA.

21 January 2018

1 reference

21 January 2018

1 reference

RNA loop-loop interactions as dynamic functional motifs.

21 January 2018

1 reference

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

21 January 2018

1 reference

The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence

21 January 2018

1 reference

Molecular dynamics simulations of RNA kissing-loop motifs reveal structural dynamics and formation of cation-binding pockets

21 January 2018

1 reference

Unusual mechanical stability of a minimal RNA kissing complex

21 January 2018

1 reference

Mechanical unfolding of two DIS RNA kissing complexes from HIV-1.

21 January 2018

1 reference

RNA LEGO: magnesium-dependent formation of specific RNA assemblies through kissing interactions

21 January 2018

1 reference

A polyhedron made of tRNAs

21 January 2018

1 reference

Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes

21 January 2018

1 reference

A new peculiar DNA structure: NMR solution structure of a DNA kissing complex

21 January 2018

1 reference

Catalyzed relaxation of a metastable DNA fuel

21 January 2018

1 reference

A DNA-fuelled molecular machine made of DNA

21 January 2018

1 reference

Mechanism for a directional, processive, and reversible DNA motor

21 January 2018

1 reference

Control of DNA strand displacement kinetics using toehold exchange.

21 January 2018

1 reference

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

21 January 2018

1 reference

Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation

21 January 2018

1 reference

End-to-end stacking and liquid crystal condensation of 6 to 20 base pair DNA duplexes

21 January 2018

1 reference

Avoiding unphysical kinetic traps in Monte Carlo simulations of strongly attractive particles

21 January 2018

1 reference

The role of collective motion in examples of coarsening and self-assembly.

21 January 2018

1 reference

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

Structures of helical junctions in nucleic acids

21 January 2018

1 reference

Paranemic cohesion of topologically-closed DNA molecules

21 January 2018

1 reference

Paranemic crossover DNA: a generalized Holliday structure with applications in nanotechnology

21 January 2018

1 reference

PX DNA triangle oligomerized using a novel three-domain motif

21 January 2018

1 reference

A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron

21 January 2018

1 reference

Double-stranded DNA homology produces a physical signature

21 January 2018

1 reference

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

21 January 2018

1 reference

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

21 January 2018

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Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex

21 January 2018

1 reference

The kinetics of spontaneous DNA branch migration

21 January 2018

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Folding DNA to create nanoscale shapes and patterns

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.4722203

1 reference

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5 February 2020

arXiv ID

1203.3577

0 references

1 reference

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