Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars. (Q52431495)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

title

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

23 March 2020

main subject

CRISPR

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

0 references

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

Bo Hu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

Nina Mitic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

Pedro Olivares-Chauvet

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

Sharan Janjuha

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

Nikolay Ninov

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

publication date

9 April 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

23 March 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106121

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

page(s)

469-473

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

23 March 2020

1 reference

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Whole-organism clone tracing using single-cell sequencing.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Methods for lineage tracing on the organism-wide level

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Somatic mutations reveal asymmetric cellular dynamics in the early human embryo

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Quantitative Analysis of Synthetic Cell Lineage Tracing Using Nuclease Barcoding

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Building a lineage from single cells: genetic techniques for cell lineage tracking

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Synthetic recording and in situ readout of lineage information in single cells.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Diffusion pseudotime robustly reconstructs lineage branching

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Whole-organism lineage tracing by combinatorial and cumulative genome editing

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Wishbone identifies bifurcating developmental trajectories from single-cell data

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Design and Analysis of Single-Cell Sequencing Experiments

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Somatic mutation in single human neurons tracks developmental and transcriptional history

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Spatial reconstruction of single-cell gene expression data

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Clonal dynamics of native haematopoiesis

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Diverse and heritable lineage imprinting of early haematopoietic progenitors.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Microhomology directs diverse DNA break repair pathways and chromosomal translocations

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Counting absolute numbers of molecules using unique molecular identifiers

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Identification of stem cells in small intestine and colon by marker gene Lgr5

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Molecular genetics of axis formation in zebrafish

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Genomic variability within an organism exposes its cell lineage tree

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Missing data and the design of phylogenetic analyses

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Organization of cardiac chamber progenitors in the zebrafish blastula

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

The zebrafish midblastula transition

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

Indeterminate cell lineage of the zebrafish embryo

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5942543

7 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FNBT.4124

inferred from DOI database lookup

7 January 2021

based on heuristic

A smart local moving algorithm for large-scale modularity-based community detection

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.4124

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.4124

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

PubMed publication ID

29644996

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29644996%20AND%20SRC:MED&resulttype=core&format=json