Conventional NMA as a better standard for evaluating elastic network models (Q51000031)

26 March 2018

title

Conventional NMA as a better standard for evaluating elastic network models (English)

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26 March 2018

author name string

Hyuntae Na

series ordinal

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26 March 2018

Guang Song

series ordinal

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26 March 2018

language of work or name

English

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publication date

18 December 2014

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26 March 2018

number of pages

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based on heuristic

inferred from page(s)

published in

Proteins

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26 March 2018

volume

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issue

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page(s)

259-267

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26 March 2018

Dynamic personalities of proteins

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Dynamics of a small globular protein in terms of low-frequency vibrational modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Analysis of domain motions by approximate normal mode calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Conformational change of proteins arising from normal mode calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Anisotropy of fluctuation dynamics of proteins with an elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Molecular mechanisms of chaperonin GroEL-GroES function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Dynamics of proteins in crystals: comparison of experiment with simple models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

An analysis of core deformations in protein superfamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Comparison of mode analyses at different resolutions applied to nucleic acid systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Anisotropic network model: systematic evaluation and a new web interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Loop motions of triosephosphate isomerase observed with elastic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Protein structural variation in computational models and crystallographic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

vGNM: a better model for understanding the dynamics of proteins in crystals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

A unification of the elastic network model and the Gaussian network model for optimal description of protein conformational motions and fluctuations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Effects of surface water on protein dynamics studied by a novel coarse-grained normal mode approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Protein elastic network models and the ranges of cooperativity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Building alternate protein structures using the elastic network model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Generalized spring tensor models for protein fluctuation dynamics and conformation changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Anharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

A natural unification of GNM and ANM and the role of inter-residue forces

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

The role of shape in determining molecular motions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Application of elastic network models to proteins in the crystalline state

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

An efficient newton-like method for molecular mechanics energy minimization of large molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

New advances in normal mode analysis of supermolecular complexes and applications to structural refinement

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Symmetry, form, and shape: guiding principles for robustness in macromolecular machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Harmonicity in slow protein dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

Bridging between normal mode analysis and elastic network models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24735

21 January 2018

Identifiers

DOI

10.1002/PROT.24735

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26 March 2018

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26 March 2018