Analysis of rat cardiac myocytes and fibroblasts identifies combinatorial enhancer organization and transcription factor families. (Q50112002)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29421235%20AND%20SRC:MED&resulttype=core&format=json

15 March 2020

title

Analysis of rat cardiac myocytes and fibroblasts identifies combinatorial enhancer organization and transcription factor families (English)

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15 March 2020

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15 March 2020

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15 March 2020

Tal Golan-Lagziel

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15 March 2020

Yair E Lewis

series ordinal

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15 March 2020

Guy Douvdevany

series ordinal

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15 March 2020

Lilac H Caspi

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15 March 2020

publication date

5 February 2018

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Journal of Molecular and Cellular Cardiology

15 March 2020

published in

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15 March 2020

volume

116

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15 March 2020

page(s)

91-105

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Transcriptional control of cardiac fibroblast plasticity

15 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Revisiting Cardiac Cellular Composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Origin, development, and differentiation of cardiac fibroblasts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

View from the heart: cardiac fibroblasts in development, scarring and regeneration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

The selection and function of cell type-specific enhancers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Transcription factors: from enhancer binding to developmental control

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Gene regulatory networks in the evolution and development of the heart

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

A transcription factor collective defines cardiac cell fate and reflects lineage history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

ChIP-Seq identification of weakly conserved heart enhancers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Large-scale discovery of enhancers from human heart tissue

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Genome-wide analysis of histone marks identifying an epigenetic signature of promoters and enhancers underlying cardiac hypertrophy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Genome-Wide Temporal Profiling of Transcriptome and Open Chromatin of Early Cardiomyocyte Differentiation Derived From hiPSCs and hESCs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Characterization and enrichment of cardiomyocytes derived from human embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Inhibition of phenylephrine induced hypertrophy in rat neonatal cardiomyocytes by the mitochondrial KATP channel opener diazoxide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Cutadapt removes adapter sequences from high-throughput sequencing reads

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Identifying ChIP-seq enrichment using MACS.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

HTSeq--a Python framework to work with high-throughput sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

RBM20 Regulates Circular RNA Production From the Titin Gene.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Dissociation of cardiogenic and postnatal myocardial activities of GATA4.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Chromatin accessibility: a window into the genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

The accessible chromatin landscape of the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Master transcription factors and mediator establish super-enhancers at key cell identity genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Super-enhancers delineate disease-associated regulatory nodes in T cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Chromatin remodeling effects on enhancer activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

A unique chromatin signature uncovers early developmental enhancers in humans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Genome-wide orchestration of cardiac functions by the orphan nuclear receptors ERRalpha and gamma

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Re-employment of developmental transcription factors in adult heart disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Gene regulatory networks governing pancreas development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Replacement of Rbpj with Rbpjl in the PTF1 complex controls the final maturation of pancreatic acinar cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

The nuclear receptor ERRalpha is required for the bioenergetic and functional adaptation to cardiac pressure overload.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

The T-box-encoding Dorsocross genes function in amnioserosa development and the patterning of the dorsolateral germ band downstream of Dpp.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

TBX5, a gene mutated in Holt-Oram syndrome, is regulated through a GC box and T-box binding elements (TBEs).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Pod1/Tcf21 is regulated by retinoic acid signaling and inhibits differentiation of epicardium-derived cells into smooth muscle in the developing heart.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Essential role of Smad3 in infarct healing and in the pathogenesis of cardiac remodeling.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Tomo-Seq Identifies SOX9 as a Key Regulator of Cardiac Fibrosis During Ischemic Injury.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

RUNX1 is essential for mesenchymal stem cell proliferation and myofibroblast differentiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Parsing the roles of the transcription factors GATA-4 and GATA-6 in the adult cardiac hypertrophic response

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Molecular mechanisms that control interstitial fibrosis in the pressure-overloaded heart

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Relationship of disease-associated gene expression to cardiac phenotype is buffered by genetic diversity and chromatin regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Multi-Cellular Transcriptional Analysis of Mammalian Heart Regeneration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

Cardiogenic genes expressed in cardiac fibroblasts contribute to heart development and repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2018.02.003

10.1016/J.YJMCC.2018.02.003

7 January 2021

Identifiers

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15 March 2020

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