Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors. (Q54541232)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

title

Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

Leonid A Mirny

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

language of work or name

English

0 references

publication date

1 August 2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

Journal of Molecular Biology

11 November 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

volume

321

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

page(s)

7-20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

Distinguishing Homologous from Analogous Proteins

11 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Homology a personal view on some of the problems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

An apology for orthologs - or brave new memes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Orthologs and paralogs - we need to get it right

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Can sequence determine function?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The COG database: a tool for genome-scale analysis of protein functions and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Prediction of transcription regulatory sites in Archaea by a comparative genomic approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The use of gene clusters to infer functional coupling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

A comparative genomics approach to prediction of new members of regulons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Furilisin: a variant of subtilisin BPN' engineered for cleaving tribasic substrates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

A method to predict functional residues in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

An evolutionary trace method defines binding surfaces common to protein families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Identification of functional surfaces of the zinc binding domains of intracellular receptors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Analysis and prediction of functional sub-types from protein sequence alignments.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Mouse-human orthology relationships in an olfactory receptor gene cluster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Predicting ligand-binding function in families of bacterial receptors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The roles of residues 5 and 9 of the recognition helix of Lac repressor in lac operator binding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The X-ray Structure of the PurR-Guanine-purF Operator Complex Reveals the Contributions of Complementary Electrostatic Surfaces and a Water-mediated Hydrogen Bond to Corepressor Specificity and Binding Affinity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Crystallographic analysis of Lac repressor bound to natural operator O1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Evolutionarily conserved pathways of energetic connectivity in protein families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

AL2CO: calculation of positional conservation in a protein sequence alignment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Evolution of an enzyme active site: the structure of a new crystal form of muconate lactonizing enzyme compared with mandelate racemase and enolase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Supersites within superfolds. Binding site similarity in the absence of homology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Covariation of residues in the homeodomain sequence family

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

MatrixPlot: visualizing sequence constraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Complete genome sequence of an M1 strain of Streptococcus pyogenes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

The complete genome sequence of Escherichia coli K-12

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Genome sequence of Yersinia pestis, the causative agent of plague

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900587-9

10.1016/S0022-2836(02)00587-9

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json

release_zdcrhemntvbbdlzs65vb32mpsq

11 November 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zdcrhemntvbbdlzs65vb32mpsq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12139929%20AND%20SRC:MED&resulttype=core&format=json