KnotInFrame: prediction of -1 ribosomal frameshift events (Q43203149)

From Wikidata

Jump to navigation Jump to search

scientific article published on 27 September 2008

edit

Language	Label	Description	Also known as
English	KnotInFrame: prediction of -1 ribosomal frameshift events	scientific article published on 27 September 2008

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

title

KnotInFrame: prediction of -1 ribosomal frameshift events (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

author name string

Corinna Theis

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

Jens Reeder

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

Robert Giegerich

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

language of work or name

English

0 references

publication date

27 September 2008

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

published in

Nucleic Acids Research

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

volume

36

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

issue

18

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

page(s)

6013-6020

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

cites work

PRFdb: a database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Locomotif: from graphical motif description to RNA motif search

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Genetic Control of Biochemical Reactions in Neurospora

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Versatile and declarative dynamic programming using pair algebras

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshifting

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Predicting genes expressed via -1 and +1 frameshifts

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

RECODE 2003.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

RNAMotif, an RNA secondary structure definition and search algorithm

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

PseudoBase: structural information on RNA pseudoknots

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Coupling of open reading frames by translational bypassing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Identification of putative programmed -1 ribosomal frameshift signals in large DNA databases

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

A dynamic programming algorithm for RNA structure prediction including pseudoknots

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Trans-splicing of nematode premessenger RNA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

25 May 2018

Thermodynamic matchers: strengthening the significance of RNA folding energies.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

15 August 2018

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

15 August 2018

A partition function algorithm for nucleic acid secondary structure including pseudoknots

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

15 August 2018

Towards a computational model for -1 eukaryotic frameshifting sites.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2566878

retrieved

15 August 2018

Fast folding and comparison of RNA secondary structures

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FNAR%2FGKN578

retrieved

21 January 2018

A discipline of dynamic programming over sequence data

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FNAR%2FGKN578

retrieved

21 January 2018

Identifiers

DOI

10.1093/NAR/GKN578

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

PMC publication ID

2566878

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

PubMed publication ID

18820303

1 reference

stated in

Europe PubMed Central

PMC publication ID

2566878

retrieved

16 November 2017

ResearchGate publication ID

23285948

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q43203149&oldid=2220346323"