SweeD: likelihood-based detection of selective sweeps in thousands of genomes (Q41920946)

14 October 2017

SweeD: likelihood-based detection of selective sweeps in thousands of genomes (English)

1 reference

14 October 2017

Pavlos Pavlidis

1 reference

14 October 2017

Daniel Živkovic

series ordinal

1 reference

14 October 2017

Alexandros Stamatakis

series ordinal

1 reference

14 October 2017

Nikolaos Alachiotis

series ordinal

1 reference

14 October 2017

18 June 2013

1 reference

Molecular Biology and Evolution

14 October 2017

1 reference

14 October 2017

1 reference

14 October 2017

1 reference

14 October 2017

2224-2234

1 reference

An integrated map of genetic variation from 1,092 human genomes

14 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Inference of Site Frequency Spectra From High-Throughput Sequence Data: Quantification of Selection on Nonsynonymous and Synonymous Sites in Humans

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Genotype and SNP calling from next-generation sequencing data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Fast and flexible simulation of DNA sequence data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Genomic scans for selective sweeps using SNP data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Linkage disequilibrium as a signature of selective sweeps

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Detecting a local signature of genetic hitchhiking along a recombining chromosome.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Generating samples under a Wright-Fisher neutral model of genetic variation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Hitchhiking under positive Darwinian selection

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

The hitch-hiking effect of a favourable gene

5 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

5 June 2018

https://pubmed.ncbi.nlm.nih.gov/23777627

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Selective sweep of a cis-regulatory sequence in a non-African population of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

Non-equilibrium theory of the allele frequency spectrum

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

The frequency spectrum of a mutation, and its age, in a general diffusion model.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748355

MPFR: A multiple-precision binary floating-point library with correct rounding

18 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST112

Theoretical foundation of population genetics at the molecular level

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23777627

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MST112

1 reference

14 October 2017

1 reference

14 October 2017

PubMed publication ID

23777627

1 reference