Full-length sequence analysis of the HLA-DRB1 locus suggests a recent origin of alleles (Q47804382)

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English	Full-length sequence analysis of the HLA-DRB1 locus suggests a recent origin of alleles	scientific article

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

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http://europepmc.org/abstract/MED/17345114

title

Full-length sequence analysis of the HLA-DRB1 locus suggests a recent origin of alleles (English)

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

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http://europepmc.org/abstract/MED/17345114

author

Tomas Bergström

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3

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

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http://europepmc.org/abstract/MED/17345114

Ulf Gyllensten

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2

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Ulf Gyllensten

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

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http://europepmc.org/abstract/MED/17345114

author name string

Jenny von Salomé

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1

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

language of work or name

English

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publication date

16 February 2007

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

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http://europepmc.org/abstract/MED/17345114

published in

Immunogenetics

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

volume

59

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

issue

4

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

page(s)

261-271

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Europe PubMed Central

PubMed publication ID

17345114

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5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

cites work

The noncoding regions of HLA-DRB uncover interlineage recombinations as a mechanism of HLA diversification

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Crossref

reference URL

https://api.crossref.org/works/10.1007%2FS00251-007-0196-8

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21 January 2018

Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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inferred from PubMed ID database lookup

Shared epitopes among HLA class II alleles: gene conversion, common ancestry and balancing selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Molecular genetics of speciation and human origins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Analysis of HLA class II haplotypes in the Cayapa Indians of Ecuador: a novel DRB1 allele reveals evidence for convergent evolution and balancing selection at position 86

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Allelic diversity is generated by intraexon sequence exchange at the DRB1 locus of primates

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Origin of major histocompatibility complex polymorphism: the trans-species hypothesis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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inferred from PubMed ID database lookup

Recent origin of HLA-DRB1 alleles and implications for human evolution

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of introns and exons of class II major histocompatibility complex genes of vertebrates

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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The nature of polymorphism of the HLA-DRB intron sequences is lineage specific.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene conversion vs point mutation in generating variability at the antigen recognition site of major histocompatibility complex loci

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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inferred from PubMed ID database lookup

HLA sequence polymorphism and the origin of humans

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Rapid allelic diversification and intensified selection at antigen recognition sites of the Mhc class II DPB1 locus during hominoid evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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The myth of Eve: molecular biology and human origins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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MHC polymorphism pre-dating speciation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of the major histocompatibility complex.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human class II major histocompatibility complex genes and proteins

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of divergence times for major lineages of primate species

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Comparative genetics of MHC polymorphisms in different primate species: duplications and deletions

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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A determination of the frequency of gene conversion in unmanipulated mouse sperm

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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New HLA–DPB1 alleles generated by interallelic gene conversion detected by analysis of sperm

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Biochemical comparison of major histocompatibility complex molecules from different subspecies of Mus musculus: evidence for trans-specific evolution of alleles

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ancient haplotypes of the HLA Class II region

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Large differences between LINE-1 amplification rates in the human and chimpanzee lineages

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HLA-DRB intron 1 sequences: implications for the evolution of HLA-DRB genes and haplotypes.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphism of human Ia antigens: gene conversion between two DR beta loci results in a new HLA-D/DR specificity

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic history of hominoid DRB loci and alleles inferred from intron sequences.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationship of HLA-DRB genes inferred from intron sequences

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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Recent divergence of the HLA-DRB1*04 allelic lineage from the DRB1*0701 lineage after the separation of the human and chimpanzee species.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Nomenclature for factors of the HLA system, update June 2005.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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"Both man & bird & beast": comparative organization of MHC genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

based on heuristic

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The evolution of human populations: a molecular perspective

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17345114

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12 December 2020

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Identifiers

DOI

10.1007/S00251-007-0196-8

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17345114

retrieved

5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

PubMed publication ID

17345114

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17345114

retrieved

5 February 2018

reference URL

http://europepmc.org/abstract/MED/17345114

 

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