Structure-based design of ligands for protein basic domains: application to the HIV-1 Tat protein (Q46732054)

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English	Structure-based design of ligands for protein basic domains: application to the HIV-1 Tat protein	scientific article

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

title

Structure-based design of ligands for protein basic domains: application to the HIV-1 Tat protein (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

main subject

protein design

0 references

protein structure

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author name string

A V Filikov

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

T L James

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

publication date

1 May 1998

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

published in

Journal of Computer - Aided Molecular Design

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

volume

12

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

issue

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

page(s)

229-240

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stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

cites work

Rapid measurement of binding constants and heats of binding using a new titration calorimeter

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA binding by the tat and rev proteins of HIV-1

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 Tat protein promotes formation of more-processive elongation complexes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Atomic solvation parameters applied to molecular dynamics of proteins in solution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydrogen-bonding contacts in the major groove are required for human immunodeficiency virus type-1 tat protein recognition of TAR RNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fragments of the HIV-1 Tat protein specifically bind TAR RNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of human immunodeficiency virus type 1 Tat activity by coexpression of heterologous trans activators

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the conserved basic domain of human immunodeficiency virus tat protein

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A minimal lentivirus Tat

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific and high-affinity binding of inositol phosphates to an isolated pleckstrin homology domain

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of the equine infectious anemia virus Tat protein

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Entropic Contributions to Rate Accelerations in Enzymic and Intramolecular Reactions and the Chelate Effect

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arginine-mediated RNA recognition: the arginine fork.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The art and practice of structure-based drug design: A molecular modeling perspective

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Circular dichroism and molecular modeling yield a structure for the complex of human immunodeficiency virus type 1 trans-activation response RNA and the binding region of Tat, the trans-acting transcriptional activator

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of RNA structure in arginine recognition of TAR RNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Aqueous solution structure of a hybrid lentiviral Tat peptide and a model of its interaction with HIV-1 TAR RNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure-based drug design: progress, results and challenges

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Empirical free energy calculations of ligand-protein crystallographic complexes. I. Knowledge-based ligand-protein interaction potentials applied to the prediction of human immunodeficiency virus 1 protease binding affinity.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR structure of a biologically active peptide containing the RNA-binding domain of human immunodeficiency virus type 1 Tat

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9749367

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1023/A:1007949625270

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

DBLP publication ID

journals/jcamd/FilikovJ98

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

Dimensions Publication ID

1052382173

0 references

PubMed publication ID

9749367

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9749367

retrieved

24 December 2017

reference URL

http://europepmc.org/abstract/MED/9749367

 

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