Phylogenetic footprinting and genome scanning identify vertebrate BMP response elements and new target genes. (Q45965916)

18 December 2017

title

Phylogenetic footprinting and genome scanning identify vertebrate BMP response elements and new target genes. (English)

1 reference

18 December 2017

1 reference

Andreas von Bubnoff

1 reference

18 December 2017

Daniel A Peiffer

1 reference

18 December 2017

Ira L Blitz

1 reference

18 December 2017

Tadayoshi Hayata

1 reference

18 December 2017

Souichi Ogata

1 reference

18 December 2017

Qiandong Zeng

1 reference

18 December 2017

Matthew Trunnell

1 reference

18 December 2017

Ken W Y Cho

1 reference

18 December 2017

language of work or name

English

0 references

publication date

1 May 2005

1 reference

18 December 2017

published in

Developmental Biology

1 reference

18 December 2017

volume

281

1 reference

18 December 2017

issue

1 reference

18 December 2017

page(s)

210-226

1 reference

18 December 2017

Twisted gastrulation loss-of-function analyses support its role as a BMP inhibitor during early Xenopus embryogenesis

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

The transmembrane protein XFLRT3 forms a complex with FGF receptors and promotes FGF signalling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

New computational approaches for analysis of cis-regulatory networks.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

A transcriptional partner for MAD proteins in TGF-beta signalling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Molecular nature of Spemann's organizer: the role of the Xenopus homeobox gene goosecoid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Can't get no SMADisfaction: Smad proteins as positive and negative regulators of TGF-beta family signals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

WebLogo: A Sequence Logo Generator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Firefly luciferase gene: structure and expression in mammalian cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Mef2c is a direct transcriptional target of ISL1 and GATA factors in the anterior heart field during mouse embryonic development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Analysis of gene expressions during Xenopus forelimb regeneration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

On the function of BMP-4 in patterning the marginal zone of the Xenopus embryo.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

The dorsalizing and neural inducing gene follistatin is an antagonist of BMP-4.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Inhibitory patterning of the anterior neural plate in Xenopus by homeodomain factors Dlx3 and Msx1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Cooperative interaction of Xvent-2 and GATA-2 in the activation of the ventral homeobox gene Xvent-1B.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Analysis of vertebrate SCL loci identifies conserved enhancers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Conserved noncoding sequences are reliable guides to regulatory elements.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Appendix G: In Situ Hybridization: An Improved Whole-Mount Method for Xenopus Embryos

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMP-Smad and Olf signaling pathways

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Disruption of BMP signals in embryonic Xenopus ectoderm leads to direct neural induction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Bone morphogenetic protein-2 promotes osteoblast apoptosis through a Smad-independent, protein kinase C-dependent signaling pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Ventral mesodermal patterning in Xenopus embryos: expression patterns and activities of BMP-2 and BMP-4

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Embryonic expression and functional analysis of a Xenopus activin receptor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Smad1 and Smad4 are components of the bone morphogenetic protein-4 (BMP-4)-induced transcription complex of the Xvent-2B promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Autoregulation of Xvent-2B; direct interaction and functional cooperation of Xvent-2 and Smad1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Xenopus Xsal-1, a vertebrate homolog of the region specific homeotic gene spalt of Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Id genes are direct targets of bone morphogenetic protein induction in embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Specificity in transforming growth factor beta-induced transcription of the plasminogen activator inhibitor-1 gene: interactions of promoter DNA, transcription factor muE3, and Smad proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Smad4 and β-Catenin Co-activators Functionally Interact with Lymphoid-enhancing Factor to Regulate Graded Expression of Msx2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Smad6 is a Smad1/5-induced smad inhibitor. Characterization of bone morphogenetic protein-responsive element in the mouse Smad6 promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Affinity purification of sequence-specific DNA binding proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Transcriptional regulation of BMP4 synexpression in transgenic Xenopus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Identification of a BMP-responsive element in Id1, the gene for inhibition of myogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

HOXA13 regulates the expression of bone morphogenetic proteins 2 and 7 to control distal limb morphogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Identification and functional characterization of distinct critically important bone morphogenetic protein-specific response elements in the Id1 promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Gene array analysis of bone morphogenetic protein type I receptor-induced osteoblast differentiation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Characterization of a bone morphogenetic protein-responsive Smad-binding element

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Transcriptional regulation of Xbr-1a/Xvent-2 homeobox gene: analysis of its promoter region.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Cardiac-specific activity of an Nkx2-5 enhancer requires an evolutionarily conserved Smad binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Direct binding of Smad1 and Smad4 to two distinct motifs mediates bone morphogenetic protein-specific transcriptional activation of Id1 gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

VISTA : visualizing global DNA sequence alignments of arbitrary length

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

A BMP-inducible gene, dlx5, regulates osteoblast differentiation and mesoderm induction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Molecular cloning of a human Vent-like homeobox gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Search for enhancers: teleost models in comparative genomic and transgenic analysis of cis regulatory elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Direct and long-range action of a DPP morphogen gradient.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Synexpression groups in eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Genes for bone morphogenetic proteins are differentially transcribed in early amphibian embryos

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

XSIP1 is essential for early neural gene expression and neural differentiation by suppression of BMP signaling.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Scanning Human Gene Deserts for Long-Range Enhancers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

A Xenopus DNA microarray approach to identify novel direct BMP target genes involved in early embryonic development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Genomic strategies to identify mammalian regulatory sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

A simple molecular complex mediates widespread BMP-induced repression during Drosophila development.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Transcriptional regulation of Xvent homeobox genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

The role of a Williams-Beuren syndrome-associated helix-loop-helix domain-containing transcription factor in activin/nodal signaling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Mechanisms of TGF-beta signaling from cell membrane to the nucleus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Crystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-beta signaling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

A truncated bone morphogenetic protein receptor affects dorsal-ventral patterning in the early Xenopus embryo.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Functional involvement of Xenopus LIM kinases in progression of oocyte maturation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Molecular mechanisms of Spemann's organizer formation: conserved growth factor synergy between Xenopus and mouse

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Initial sequencing and comparative analysis of the mouse genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Induction of epidermis and inhibition of neural fate by Bmp-4

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

XIdx, a dominant negative regulator of bHLH function in early Xenopus embryos

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

DACH1 inhibits transforming growth factor-beta signaling through binding Smad4

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

A Dominant Negative Bone Morphogenetic Protein 4 Receptor Causes Neuralization in Xenopus Ectoderm

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Negative regulation of BMP/Smad signaling by Tob in osteoblasts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

BMP-2 and sonic hedgehog have contrary effects on adipocyte-like differentiation of C3H10T1/2 cells.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Id gene activity during Xenopus embryogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

Smad3 and Smad4 cooperate with c-Jun/c-Fos to mediate TGF-beta-induced transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2005.02.014

10.1016/J.YDBIO.2005.02.014

7 January 2021

Identifiers

DOI

1 reference

18 December 2017

1 reference

18 December 2017