Bacteriophage phi29 DNA replication arrest caused by codirectional collisions with the transcription machinery (Q33887525)

29 July 2017

title

Bacteriophage phi29 DNA replication arrest caused by codirectional collisions with the transcription machinery (English)

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29 July 2017

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Montserrat Elías-Arnanz

M Elías-Arnanz

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M Salas

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29 July 2017

language of work or name

English

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publication date

1 September 1997

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29 July 2017

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

5775-5783

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Relating structure to function in phi29 DNA polymerase

29 July 2017

cites work

1 reference

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Activation and repression of transcription at two different phage phi29 promoters are mediated by interaction of the same residues of regulatory protein p4 with RNA polymerase

5 July 2018

1 reference

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Initiation and termination of DNA replication in human rRNA genes

5 July 2018

1 reference

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Assembly of phage phi 29 genome with viral protein p6 into a compact complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Adenovirus replication and transcription sites are spatially separated in the nucleus of infected cells

5 July 2018

1 reference

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Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Replication fork barriers in the Xenopus rDNA.

5 July 2018

1 reference

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A transcribing RNA polymerase molecule survives DNA replication without aborting its growing RNA chain

5 July 2018

1 reference

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Initiation of phage phi 29 DNA replication in vitro: formation of a covalent complex between the terminal protein, p3, and 5'-dAMP.

5 July 2018

1 reference

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Replication of phage phi 29 DNA with purified terminal protein and DNA polymerase: synthesis of full-length phi 29 DNA.

5 July 2018

1 reference

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When polymerases collide: replication and the transcriptional organization of the E. coli chromosome

5 July 2018

1 reference

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Modulation of in vivo and in vitro transcription of bacteriophage phi 29 early genes

5 July 2018

1 reference

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Organization of replication of ribosomal DNA in Saccharomyces cerevisiae

5 July 2018

1 reference

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A replication fork barrier at the 3' end of yeast ribosomal RNA genes

5 July 2018

1 reference

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In vivo transcription of bacteriophage phi 29 DNA: transcription termination

5 July 2018

1 reference

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In vitro transcription of bacteriophage phi 29 DNA: inhibition of early promoters by the viral replication protein p6.

5 July 2018

1 reference

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Effects of internal deletions on the priming activity of the phage phi 29 terminal protein

5 July 2018

1 reference

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Characterization of a new prokaryotic transcriptional activator and its DNA recognition site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes

5 July 2018

1 reference

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Orientation of genes in the Bacillus subtilis chromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

DNA-independent deoxynucleotidylation of the phi 29 terminal protein by the phi 29 DNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

A DNA curvature can substitute phage phi 29 regulatory protein p4 when acting as a transcriptional repressor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Deoxyribonuclease I footprinting of defined complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected biochemical properties

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

Consequences of replication fork movement through transcription units in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

RNA Polymerase binding sites and transcription map of the DNA of Bacillus subtilis phage φ29

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

The DNA replication fork can pass RNA polymerase without displacing the nascent transcript

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170208

DNA replication fork pause sites dependent on transcription

29 October 2018

1 reference

12 December 2020

RNA polymerase II transcription is concentrated outside replication domains throughout S-phase

1 reference

12 December 2020

Transcription regulation in Bacillus subtilis phage phi 29: expression of the viral promoters throughout the infection cycle

1 reference

12 December 2020

Purification of bacteriophage phi 29 DNA polymerase

1 reference

12 December 2020

Purification of bacteriophage T4 DNA replication proteins

1 reference

12 December 2020

DNA replication of bacteriophage T4 in vivo

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/16.18.5775

1 reference

release_rr6mm3dpgjbsrnkaty4kt7vnfa

29 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rr6mm3dpgjbsrnkaty4kt7vnfa

24 November 2022

mapped directly with Wikidata item

PMC publication ID

1170208

1 reference

29 July 2017

1 reference