Genome-wide functional analysis of human 5' untranslated region introns (Q33829781)

29 July 2017

title

Genome-wide functional analysis of human 5' untranslated region introns (English)

1 reference

29 July 2017

Can Cenik

0 references

Frederick P Roth

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Adnan Derti

1 reference

29 July 2017

Joseph C Mellor

series ordinal

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29 July 2017

Gabriel F Berriz

series ordinal

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29 July 2017

publication date

11 March 2010

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29 July 2017

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

R29

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The UCSC Genome Browser database: update 2010

29 July 2017

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4 July 2018

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Functional characterization of two novel 5' untranslated exons reveals a complex regulation of NOD2 protein expression

4 July 2018

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4 July 2018

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4 July 2018

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Protecting exons from deleterious R-loops: a potential advantage of having introns

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Intron size, abundance, and distribution within untranslated regions of genes

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Unusual intron conservation near tissue-regulated exons found by splicing microarrays

4 July 2018

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4 July 2018

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The small introns of antisense genes are better explained by selection for rapid transcription than by "genomic design"

4 July 2018

1 reference

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Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

4 July 2018

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4 July 2018

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Nonsense-mediated mRNA decay in mammals

4 July 2018

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

4 July 2018

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Compactness of human housekeeping genes: selection for economy or genomic design?

4 July 2018

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A gene atlas of the mouse and human protein-encoding transcriptomes

4 July 2018

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4 July 2018

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Analysis and recognition of 5' UTR intron splice sites in human pre-mRNA.

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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The signature of selection mediated by expression on human genes

4 July 2018

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4 July 2018

1 reference

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Human housekeeping genes are compact

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

How introns influence and enhance eukaryotic gene expression

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Non-receptor protein tyrosine kinases

4 July 2018

1 reference

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Distribution and characterization of regulatory elements in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Promoter proximal splice sites enhance transcription

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Selection for short introns in highly expressed genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Stimulatory effect of splicing factors on transcriptional elongation

4 July 2018

1 reference

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Structural and functional features of eukaryotic mRNA untranslated regions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Intrinsic noise in gene regulatory networks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

The Sequence of the Human Genome

4 July 2018

1 reference

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The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

An intronic enhancer containing an N-box motif is required for synapse- and tissue-specific expression of the acetylcholinesterase gene in skeletal muscle fibers

4 July 2018

1 reference

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Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Introns increase transcriptional efficiency in transgenic mice

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Heterologous introns can enhance expression of transgenes in mice

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Intron requirement for expression of the human purine nucleoside phosphorylase gene

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Why do genes have introns? Recombination might add a new piece to the puzzle.

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Position of the final intron in full-length transcripts: determined by NMD?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

"Genome design" model: evidence from conserved intronic sequence in human-mouse comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Complex selection on intron size in Cryptococcus neoformans

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Evolutionary conservation of UTR intron boundaries in Cryptococcus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Gene expression enhancement mediated by the 5' UTR intron of the rice rubi3 gene varied remarkably among tissues in transgenic rice plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Detecting regulatory sites using PhyloGibbs

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864569

Human antisense genes have unusually short introns: evidence for selection for rapid transcription

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R29

Transcriptional regulatory elements within the first intron of Bruton's tyrosine kinase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20222956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

In plants, highly expressed genes are the least compact

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20222956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2010-11-3-R29

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference