Genomic landscape of human, bat, and ex vivo DNA transposon integrations (Q33801920)

29 July 2017

title

Genomic landscape of human, bat, and ex vivo DNA transposon integrations (English)

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29 July 2017

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29 July 2017

Francesca Chiaromonte

series ordinal

object named as

Francesca Chiaromonte

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29 July 2017

Cédric Feschotte

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29 July 2017

author name string

Rebeca Campos-Sánchez

series ordinal

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29 July 2017

Kateryna D Makova

series ordinal

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29 July 2017

publication date

22 April 2014

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Molecular Biology and Evolution

29 July 2017

published in

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

1816-1832

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Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections

29 July 2017

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Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo

4 July 2018

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4 July 2018

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Transposable element insertions have strongly affected human evolution

4 July 2018

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4 July 2018

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Single-stranded DNA transposition is coupled to host replication.

4 July 2018

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Translating Sleeping Beauty transposition into cellular therapies: victories and challenges

4 July 2018

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Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

4 July 2018

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A role for host-parasite interactions in the horizontal transfer of transposons across phyla

4 July 2018

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The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important

4 July 2018

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4 July 2018

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4 July 2018

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Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Transposition into replicating DNA occurs through interaction with the processivity factor

4 July 2018

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4 July 2018

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4 July 2018

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Centromere sequence and dynamics in Dictyostelium discoideum

4 July 2018

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Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

4 July 2018

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Testing the palindromic target site model for DNA transposon insertion using the Drosophila melanogaster P-element

4 July 2018

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A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

4 July 2018

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Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

4 July 2018

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DNA transposons and the evolution of eukaryotic genomes

4 July 2018

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Contribution of telomerase RNA retrotranscription to DNA double-strand break repair during mammalian genome evolution

4 July 2018

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Predicting preferential DNA vector insertion sites: implications for functional genomics and gene therapy

4 July 2018

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The genome-wide determinants of human and chimpanzee microsatellite evolution

4 July 2018

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Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase

4 July 2018

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A unified classification system for eukaryotic transposable elements

4 July 2018

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Discovering and detecting transposable elements in genome sequences

4 July 2018

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Endings in the middle: current knowledge of interstitial telomeric sequences

4 July 2018

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Give-and-take: interactions between DNA transposons and their host plant genomes

4 July 2018

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Helitrons on a roll: eukaryotic rolling-circle transposons

4 July 2018

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Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

4 July 2018

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The ancient mariner sails again: transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends

4 July 2018

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Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres

4 July 2018

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The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

4 July 2018

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Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

4 July 2018

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Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns

4 July 2018

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G-quadruplexes in promoters throughout the human genome

4 July 2018

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PiggyBac transposon-mediated gene transfer in human cells

4 July 2018

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Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity.

4 July 2018

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4 July 2018

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Target DNA structure plays a critical role in RAG transposition

4 July 2018

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Structure-based prediction of insertion-site preferences of transposons into chromosomes

4 July 2018

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Z-DNA-forming sequences generate large-scale deletions in mammalian cells

4 July 2018

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A fine-scale map of recombination rates and hotspots across the human genome

4 July 2018

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Galaxy: a platform for interactive large-scale genome analysis

4 July 2018

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Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice

4 July 2018

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

4 July 2018

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High-resolution genome-wide mapping of transposon integration in mammals

4 July 2018

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Transposable elements as tools for genomics and genetics in Drosophila

4 July 2018

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Interplay between Drosophila Bloom's syndrome helicase and Ku autoantigen during nonhomologous end joining repair of P element-induced DNA breaks

4 July 2018

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Duplication, coclustering, and selection of human Alu retrotransposons

4 July 2018

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Replication timing of the human genome

4 July 2018

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The Sleeping Beauty transposable element: evolution, regulation and genetic applications

4 July 2018

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Transposon Mutagenesis of the Mouse Germline

4 July 2018

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Structural origins of adenine-tract bending

4 July 2018

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The UCSC Genome Browser Database

4 July 2018

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Human L1 element target-primed reverse transcription in vitro

4 July 2018

1 reference

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Use of the piggyBac transposon for germ-line transformation of insects

4 July 2018

1 reference

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The human genome browser at UCSC

4 July 2018

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Alu repeats and human genomic diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Rolling-circle transposons in eukaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Regulation of activator/dissociation transposition by replication and DNA methylation

4 July 2018

1 reference

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Initial sequencing and analysis of the human genome

4 July 2018

1 reference

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Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans

4 July 2018

1 reference

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Insertion site preferences of the P transposable element in Drosophila melanogaster

4 July 2018

1 reference

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Tandem repeats finder: a program to analyze DNA sequences

4 July 2018

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Chromosomal transposition of a Tc1/mariner-like element in mouse embryonic stem cells

4 July 2018

1 reference

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Abortive Gap Repair: Underlying Mechanism for Ds element Formation

4 July 2018

1 reference

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DNA sequence analyses support the role of interrupted gap repair in the origin of internal deletions of the maize transposon, MuDR

4 July 2018

1 reference

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Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis

4 July 2018

1 reference

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High-frequency P element loss in Drosophila is homolog dependent.

4 July 2018

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The origin of footprints of the Tc1 transposon of Caenorhabditis elegans

4 July 2018

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Characterization and functional annotation of nested transposable elements in eukaryotic genomes

4 July 2018

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DNA sequence requirements for hobo transposable element transposition in Drosophila melanogaster

30 October 2018

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Large inverted repeats in the vicinity of a single double-strand break strongly affect repair in yeast diploids lacking Rad51.

30 October 2018

1 reference

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Bats with hATs: evidence for recent DNA transposon activity in genus Myotis

30 October 2018

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Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Target-site preferences of Sleeping Beauty transposons.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Healing the wounds inflicted by sleeping beauty transposition by double-strand break repair in mammalian somatic cells

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Active Alu elements are passed primarily through paternal germlines

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Large-scale human promoter mapping using CpG islands.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069622

Maize Activator transposase has a bipartite DNA binding domain that recognizes subterminal sequences and the terminal inverted repeats

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24809961

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24809961

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24809961

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSU138

1 reference

29 July 2017

1 reference

29 July 2017

1 reference