RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome (Q33742109)

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English	RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

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sexual dimorphism

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based on heuristic

inferred from title

7

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Europe PubMed Central

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29 July 2017

Nadia M Davidson

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Nadia M Davidson

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Craig A Smith

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author name string

Katie L Ayers

1

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Europe PubMed Central

PubMed publication ID

29 July 2017

Diana Demiyah

3

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Europe PubMed Central

PubMed publication ID

29 July 2017

Kelly N Roeszler

4

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Europe PubMed Central

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29 July 2017

Frank Grützner

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Europe PubMed Central

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29 July 2017

Andrew H Sinclair

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Europe PubMed Central

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29 July 2017

publication date

25 March 2013

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Europe PubMed Central

PubMed publication ID

29 July 2017

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Europe PubMed Central

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29 July 2017

14

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Europe PubMed Central

PubMed publication ID

29 July 2017

3

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Europe PubMed Central

PubMed publication ID

29 July 2017

R26

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Europe PubMed Central

PubMed publication ID

29 July 2017

describes a project that uses

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edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

A series of normal stages in the development of the chick embryo

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

30 October 2018

Chicken hemogen homolog is involved in the chicken-specific sex-determining mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Sex-biased gene expression on the avian Z chromosome: highly expressed genes show higher male-biased expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Identification of avian W-linked contigs by short-read sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

W chromosome expression responds to female-specific selection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Evidence for avian cell autonomous sex identity (CASI) and implications for the sex-determination process?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

The end of gonad-centric sex determination in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Possible differences in the two Z chromosomes in male chickens and evolution of MHM sequences in Galliformes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

From RNA-seq reads to differential expression results

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Synteny conservation of chicken macrochromosomes 1-10 in different avian lineages revealed by cross-species chromosome painting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

De novo assembly and analysis of RNA-seq data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Identification of early transcripts related to male development in chicken embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Somatic sex identity is cell autonomous in the chicken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Sex determines the expression level of one third of the actively expressed genes in bovine blastocysts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

TopHat: discovering splice junctions with RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

ABySS: a parallel assembler for short read sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Genetic evidence against a role for W-linked histidine triad nucleotide binding protein (HINTW) in avian sex determination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Cloning and expression of R-Spondin1 in different vertebrates suggests a conserved role in ovarian development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

A bird's-eye view of sex chromosome dosage compensation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Sex determination in birds: HINTs from the W sex chromosome?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

The evolution of sex chromosomes and sex determination in vertebrates and the key role of DMRT1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Dosage compensation is less effective in birds than in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Growth hormone regulation of sex-dependent liver gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Gene expression during sex determination reveals a robust female genetic program at the onset of ovarian development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Molecular and cytological characterization of SspI-family repetitive sequence on the chicken W chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Wpkci, encoding an altered form of PKCI, is conserved widely on the avian W chromosome and expressed in early female embryos: implication of its role in female sex determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

CAP3: A DNA sequence assembly program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Evolution of the avian sex chromosomes from an ancestral pair of autosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

First gene on the avian W chromosome (CHD) provides a tag for universal sexing of non-ratite birds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Nucleotide sequences and unusual electrophoretic behavior of the W chromosome-specific repeating DNA units of the domestic fowl, Gallus gallus domesticus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

21 June 2018

Expression of Sry-related genes in the developing genital ridge/mesonephros of the chick embryo

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

Male-specific cell migration into the developing gonad is a conserved process involving PDGF signalling

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

Online synonymous codon usage analyses with the ade4 and seqinR packages

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

PKCI-W forms a heterodimer with PKCI-Z and inhibits the biological activities of PKCI-Z in vitro, supporting the predicted role of PKCI-W in sex determination in birds

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

Nonrandom representation of sex-biased genes on chicken Z chromosome

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-3-R26

21 January 2018

Comprehensive search for chicken W chromosome-linked genes expressed in early female embryos from the female-minus-male subtracted cDNA macroarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053838

30 October 2018

Distribution of XhoI and EcoRI family repetitive DNA sequences into separate domains in the chicken W chromosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of the avian sex chromosomes and their role in sex determination

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Is the Y chromosome disappearing?--both sides of the argument

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sexing chick embryos: a rapid and simple protocol

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2013-14-3-R26

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Dimensions Publication ID

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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