Archaic chaos: intrinsically disordered proteins in Archaea (Q33593571)

28 July 2017

title

Archaic chaos: intrinsically disordered proteins in Archaea (English)

1 reference

28 July 2017

0 references

Bin Xue

1 reference

28 July 2017

Robert W Williams

1 reference

28 July 2017

Christopher J Oldfield

1 reference

28 July 2017

A Keith Dunker

1 reference

28 July 2017

Vladimir N Uversky

1 reference

28 July 2017

publication date

28 May 2010

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28 July 2017

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28 July 2017

volume

4 Suppl 1

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28 July 2017

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Creative Commons Attribution 2.0 Generic

28 July 2017

start time

1 May 2010

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov

21 June 2018

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Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

21 June 2018

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The Genome Sequence of the Metal-Mobilizing, Extremely Thermoacidophilic Archaeon Metallosphaera sedula Provides Insights into Bioleaching-Associated Metabolism

21 June 2018

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A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea

21 June 2018

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21 June 2018

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The Pfam protein families database

21 June 2018

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Solution structure of the beta-subunit of the translation initiation factor aIF2 from archaebacteria Sulfolobus solfataricus

21 June 2018

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Mining alpha-helix-forming molecular recognition features with cross species sequence alignments

21 June 2018

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New roads lead to Rubisco in archaebacteria

21 June 2018

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Composition Profiler: a tool for discovery and visualization of amino acid composition differences

21 June 2018

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Ignicoccus hospitalis sp. nov., the host of 'Nanoarchaeum equitans'.

21 June 2018

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Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

21 June 2018

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Adaptations to energy stress dictate the ecology and evolution of the Archaea

21 June 2018

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Intrinsic disorder and functional proteomics

21 June 2018

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Methanococcus aeolicus sp. nov., a mesophilic, methanogenic archaeon from shallow and deep marine sediments

21 June 2018

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The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity

21 June 2018

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Isolation of a novel acidiphilic methanogen from an acidic peat bog.

21 June 2018

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Length-dependent prediction of protein intrinsic disorder.

21 June 2018

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Structural homology between different archaebacterial DNA-dependent RNA polymerases analyzed by immunological comparison of their components

21 June 2018

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Archaeoglobus fulgidus Isolated from Hot North Sea Oil Field Waters

21 June 2018

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Methanosarcina mazei LYC, a New Methanogenic Isolate Which Produces a Disaggregating Enzyme.

21 June 2018

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Methanosarcina acetivorans sp. nov., an Acetotrophic Methane-Producing Bacterium Isolated from Marine Sediments

21 June 2018

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Isolation of an autotrophic ammonia-oxidizing marine archaeon

21 June 2018

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Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

The Genome of Sulfolobus acidocaldarius, a Model Organism of the Crenarchaeota

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Pyrobaculum calidifontis sp. nov., a novel hyperthermophilic archaeon that grows in atmospheric air.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Comparing and combining predictors of mostly disordered proteins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Growth kinetics of extremely halophilic archaea (family halobacteriaceae) as revealed by arrhenius plots

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Structure of the archaeal translation initiation factor aIF2 from Methanobacterium thermoautotrophicum: Implications for translation initiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

The Pfam protein families database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Identification and functions of usefully disordered proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Environmental Diversity of Bacteria and Archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Intrinsic disorder and protein function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Exploring prokaryotic diversity in the genomic era

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

The Pfam protein families database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Haloarcula marismortui (Volcani) sp. nov., nom. rev., an extremely halophilic bacterium from the Dead Sea.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Intrinsically disordered protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Archaeal dominance in the mesopelagic zone of the Pacific Ocean

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium

21 June 2018

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Respiration of arsenate and selenate by hyperthermophilic archaea

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Sequence complexity of disordered protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Why are "natively unfolded" proteins unstructured under physiologic conditions?

21 June 2018

1 reference

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Interpreting the universal phylogenetic tree

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Everything in moderation: archaea as 'non-extremophiles'.

21 June 2018

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Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough.

21 June 2018

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Genomic evidence for two functionally distinct gene classes.

21 June 2018

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Archaea: what can we learn from their sequences?

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Archaeal Genomics: An Overview

21 June 2018

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A molecular view of microbial diversity and the biosphere

21 June 2018

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Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C

21 June 2018

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A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov

21 June 2018

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Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp.

21 June 2018

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Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum

21 June 2018

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A simple method for displaying the hydropathic character of a protein

21 June 2018

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Isolation of Methanobrevibacter smithii from human feces

21 June 2018

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A Thermophilic, Acidophilic Mycoplasma Isolated from a Coal Refuse Pile

21 June 2018

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Methanobacterium thermoautotrophicus sp. n., an anaerobic, autotrophic, extreme thermophile

21 June 2018

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Methanosphaera stadtmaniae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen

21 June 2018

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Gene organization and structure of two transcriptional units from Methanococcus coding for ribosomal proteins and elongation factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Ribosomal proteins in halobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Hyperthermus butylicus, a hyperthermophilic sulfur-reducing archaebacterium that ferments peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

21 June 2018

1 reference

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Methanococcus vannielii: culture and effects of selenium and tungsten on growth

21 June 2018

1 reference

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Phylogenetic structure of the prokaryotic domain: The primary kingdoms

21 June 2018

1 reference

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Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes

21 June 2018

1 reference

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Isolation of extremely thermophilic sulfate reducers: evidence for a novel branch of archaebacteria

30 October 2018

1 reference

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Coupled folding and binding with alpha-helix-forming molecular recognition elements

30 October 2018

1 reference

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The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

30 October 2018

1 reference

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Protein flexibility and intrinsic disorder

30 October 2018

1 reference

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Predicting intrinsic disorder from amino acid sequence

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880407

Archaeal phylogeny based on ribosomal proteins

30 October 2018

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Transcription and translation in Archaea: a mosaic of eukaryal and bacterial features

30 October 2018

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Intrinsic protein disorder in complete genomes

30 October 2018

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Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation

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12 December 2020

Life at extremely low pH

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Abundance of intrinsically unstructured proteins in P. falciparum and other apicomplexan parasite proteomes

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12 December 2020

Optimizing long intrinsic disorder predictors with protein evolutionary information

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12 December 2020

10.1186/1752-0509-4-S1-S1

Identifiers

DOI

1 reference

28 July 2017

DBLP publication ID

journals/bmcsb/XueWODU10

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

28 July 2017

1 reference