Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems (Q33434470)

26 July 2017

title

Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems (English)

1 reference

26 July 2017

1 reference

26 July 2017

Ram Samudrala

1 reference

26 July 2017

Fred Heffron

series ordinal

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26 July 2017

publication date

24 April 2009

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26 July 2017

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26 July 2017

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26 July 2017

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26 July 2017

page(s)

e1000375

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Creative Commons Attribution 4.0 International

26 July 2017

start time

24 April 2009

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination

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A small-molecule inhibitor of type III secretion inhibits different stages of the infectious cycle of Chlamydia trachomatis

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21 June 2018

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21 June 2018

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Subterfuge and manipulation: type III effector proteins of phytopathogenic bacteria

21 June 2018

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21 June 2018

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21 June 2018

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Inhibition of chlamydiae by primary alcohols correlates with the strain-specific complement of plasticity zone phospholipase D genes

21 June 2018

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Identification of Salmonella gallinarum virulence genes in a chicken infection model using PCR-based signature-tagged mutagenesis

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Structural characterization of the molecular platform for type III secretion system assembly.

21 June 2018

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A directed screen for chlamydial proteins secreted by a type III mechanism identifies a translocated protein and numerous other new candidates

21 June 2018

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21 June 2018

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21 June 2018

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Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective

21 June 2018

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Dissecting the PhoP regulatory network of Escherichia coli and Salmonella enterica

21 June 2018

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The Salmonella enterica serovar typhimurium-encoded type III secretion systems can translocate Chlamydia trachomatis proteins into the cytosol of host cells

21 June 2018

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Process of protein transport by the type III secretion system

21 June 2018

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21 June 2018

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Type III protein secretion mechanism in mammalian and plant pathogens

21 June 2018

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Identification of host-specific colonization factors of Salmonella enterica serovar Typhimurium

21 June 2018

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Diverse evolutionary mechanisms shape the type III effector virulence factor repertoire in the plant pathogen Pseudomonas syringae

21 June 2018

1 reference

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A chlamydial type III translocated protein is tyrosine-phosphorylated at the site of entry and associated with recruitment of actin

21 June 2018

1 reference

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Illuminating the Evolutionary History of Chlamydiae

21 June 2018

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Dissecting virulence: systematic and functional analyses of a pathogenicity island

21 June 2018

1 reference

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Salmonella type III secretion-associated chaperones confer secretion-pathway specificity

21 June 2018

1 reference

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Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter

21 June 2018

1 reference

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Expression and localization of type III secretion-related proteins of Chlamydia pneumoniae

21 June 2018

1 reference

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A Burkholderia pseudomallei type III secreted protein, BopE, facilitates bacterial invasion of epithelial cells and exhibits guanine nucleotide exchange factor activity

21 June 2018

1 reference

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PhoP-responsive expression of the Salmonella enterica serovar typhimurium slyA gene

21 June 2018

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Identifying type III effectors of plant pathogens and analyzing their interaction with plant cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Molecular and functional analysis of the type III secretion signal of the Salmonella enterica InvJ protein

21 June 2018

1 reference

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Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000

21 June 2018

1 reference

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Pathogenicity islands and virulence plasmids of bacterial plant pathogens

21 June 2018

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A functional screen for the type III (Hrp) secretome of the plant pathogen Pseudomonas syringae.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

The invasion-associated type III secretion system of Salmonella enterica serovar Typhimurium is necessary for intracellular proliferation and vacuole biogenesis in epithelial cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Molecular characterization of type III secretion signals via analysis of synthetic N-terminal amino acid sequences

21 June 2018

1 reference

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Targeting exported substrates to the Yersinia TTSS: different functions for different signals?

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

A secondary structure motif predictive of protein localization to the chlamydial inclusion membrane

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Evidence for the secretion of Chlamydia trachomatis CopN by a type III secretion mechanism.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Molecular characterization and assembly of the needle complex of the Salmonella typhimurium type III protein secretion system

21 June 2018

1 reference

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Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence

21 June 2018

1 reference

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Phylogenetic analyses of the constituents of Type III protein secretion systems

21 June 2018

1 reference

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A conserved amino acid sequence directing intracellular type III secretion by Salmonella typhimurium

21 June 2018

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Salmonella pathogenicity island 2.

21 June 2018

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Chlamydia trachomatis: impact on human reproduction

21 June 2018

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Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals

21 June 2018

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Type III secretion machines: bacterial devices for protein delivery into host cells

21 June 2018

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Machine learning approaches for the prediction of signal peptides and other protein sorting signals

21 June 2018

1 reference

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Functional conservation of the effector protein translocators PopB/YopB and PopD/YopD of Pseudomonas aeruginosa and Yersinia pseudotuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Type III protein secretion systems in bacterial pathogens of animals and plants

21 June 2018

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Type III secretion genes identify a putative virulence locus of Chlamydia

21 June 2018

1 reference

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Expression profile and subcellular location of the plasmid-encoded virulence (Spv) proteins in wild-type Salmonella dublin

21 June 2018

1 reference

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Delineation and mutational analysis of the Yersinia pseudotuberculosis YopE domains which mediate translocation across bacterial and eukaryotic cellular membranes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

Identification of the YopE and YopH domains required for secretion and internalization into the cytosol of macrophages, using the cyaA gene fusion approach

21 June 2018

1 reference

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Functional conservation among members of the Salmonella typhimurium InvA family of proteins

21 June 2018

1 reference

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Functional conservation of the secretion and translocation machinery for virulence proteins of yersiniae, salmonellae and shigellae.

21 June 2018

1 reference

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Chlamydia trachomatis infections in the United States. What are they costing us?

21 June 2018

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Basic local alignment search tool

21 June 2018

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21 June 2018

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Secretion of hybrid proteins by the Yersinia Yop export system

21 June 2018

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PhoP/PhoQ: macrophage-specific modulators ofSalmonellavirulence?

21 June 2018

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Salmonella typhimurium activates virulence gene transcription within acidified macrophage phagosomes

21 June 2018

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Emergence of multidrug-resistant Salmonella enterica serotype typhimurium DT104 infections in the United States

21 June 2018

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Bioinformatics correctly identifies many type III secretion substrates in the plant pathogen Pseudomonas syringae and the biocontrol isolate P. fluorescens SBW25.

21 January 2018

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Novel exchangeable effector loci associated with the Pseudomonas syringae hrp pathogenicity island: evidence for integron-like assembly from transposed gene cassettes

21 January 2018

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21 January 2018

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Multiple approaches to a complete inventory of Pseudomonas syringae pv. tomato DC3000 type III secretion system effector proteins.

21 January 2018

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Support vector machine classification on the web.

21 January 2018

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On Comparing Classifiers: Pitfalls to Avoid and a Recommended Approach

21 January 2018

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Prediction of functional class of novel bacterial proteins without the use of sequence similarity by a statistical learning method

21 January 2018

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Mismatch string kernels for discriminative protein classification

21 January 2018

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Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein.

21 January 2018

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POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.

21 January 2018

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Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ.

21 January 2018

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Mg2+ as an extracellular signal: environmental regulation of Salmonella virulence

21 January 2018

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Biogenesis of the gram-negative bacterial outer membrane.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000375

A common structural motif in the binding of virulence factors to bacterial secretion chaperones

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000375

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

A support vector machine approach to the identification of phosphorylation sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2668754

The F plasmid-encoded TraM protein stimulates relaxosome-mediated cleavage at oriT through an interaction with TraI

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19390620

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1000375

1 reference

26 July 2017

1 reference

26 July 2017

1 reference