Biocomputational prediction of non-coding RNAs in model cyanobacteria (Q33421117)

26 July 2017

title

Biocomputational prediction of non-coding RNAs in model cyanobacteria (English)

1 reference

26 July 2017

1 reference

Jens Georg

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Björn Voss

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Wolfgang R Hess

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Verena Schön

1 reference

26 July 2017

Susanne Ude

series ordinal

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26 July 2017

language of work or name

English

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publication date

23 March 2009

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26 July 2017

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26 July 2017

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26 July 2017

page(s)

123

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The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus

26 July 2017

cites work

1 reference

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Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

21 June 2018

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Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

21 June 2018

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Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843.

21 June 2018

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Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

21 June 2018

1 reference

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Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021

21 June 2018

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Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics

21 June 2018

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A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions

21 June 2018

1 reference

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CsrB sRNA family: sequestration of RNA-binding regulatory proteins

21 June 2018

1 reference

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Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

21 June 2018

1 reference

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Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets

21 June 2018

1 reference

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The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

21 June 2018

1 reference

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Small non-coding RNAs and the bacterial outer membrane

21 June 2018

1 reference

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Genetic manipulation of Prochlorococcus strain MIT9313: green fluorescent protein expression from an RSF1010 plasmid and Tn5 transposition

21 June 2018

1 reference

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Structural analysis of aligned RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

An internal antisense RNA regulates expression of the photosynthesis gene isiA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

How to find small non-coding RNAs in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Identification of cyanobacterial non-coding RNAs by comparative genome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Micros for microbes: non-coding regulatory RNAs in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Fast and reliable prediction of noncoding RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Rfam: annotating non-coding RNAs in complete genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

RALEE--RNA ALignment editor in Emacs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

A survey of small RNA-encoding genes in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Secondary structure prediction for aligned RNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Construction of promoter probe vectors for Synechocystis sp. PCC 6803 using the light-emitting reporter systems Gfp and LuxAB.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

RNA bulges as architectural and recognition motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Antisense RNA control in bacteria, phages, and plasmids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Escherichia coli 6S RNA gene is part of a dual-function transcription unit.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Two distinct types of 6S RNA in Prochlorococcus.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Identification of a furA cis antisense RNA in the cyanobacterium Anabaena sp. PCC 7120.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Chaperonin Genes of theSynechocystisPCC 6803 Are Differentially Regulated under Light–Dark Transition during Heat Stress

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2662882

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19309518

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Targeted inactivation of the hrcA repressor gene in cyanobacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19309518

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-10-123

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-123

9 September 2019

1 reference

26 July 2017

1 reference