High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies (Q33356613)

26 July 2017

title

High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies (English)

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26 July 2017

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whole genome sequencing

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Jue D Wang

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Anjana Srivatsan

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Richard Gibbs

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26 July 2017

Yi Han

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26 July 2017

Jianlan Peng

series ordinal

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26 July 2017

Ashley K Tehranchi

series ordinal

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26 July 2017

Rui Chen

series ordinal

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26 July 2017

publication date

1 August 2008

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26 July 2017

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26 July 2017

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26 July 2017

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26 July 2017

page(s)

e1000139

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Creative Commons Attribution 4.0 International

26 July 2017

start time

1 August 2008

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April 2022 Public Data File from Crossref

copyrighted

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cites work

Ecology and genomics of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Control of bacterial transcription, translation and replication by (p)ppGpp

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

SOAP: short oligonucleotide alignment program

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Mutation as a stress response and the regulation of evolvability

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Nutritional control of elongation of DNA replication by (p)ppGpp

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Empirical fitness landscapes reveal accessible evolutionary paths

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Bacillus subtilis genome diversity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

TRANSFORMATION OF BIOCHEMICALLY DEFICIENT STRAINS OF BACILLUS SUBTILIS BY DEOXYRIBONUCLEATE.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

YtkD and MutT protect vegetative cells but not spores of Bacillus subtilis from oxidative stress

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Role of LrpC from Bacillus subtilis in DNA transactions during DNA repair and recombination

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Clusters of mutations from transient hypermutability

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Essential Bacillus subtilis genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

The genes degQ, pps, and lpa-8 (sfp) are responsible for conversion of Bacillus subtilis 168 to plipastatin production

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Base-calling of automated sequencer traces using phred. II. Error probabilities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

A novel Bacillus natto plasmid pLS32 capable of replication in Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Cloning and characterization of a relA/spoT homologue from Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Stability and asymmetric replication of the Bacillus subtilis 168 chromosome structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Identification of common molecular subsequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Catabolic repression of bacterial sporulation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Chromosomal location of pleiotropic negative sporulation mutations in Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Phenotypes of pleiotropic-negative sporulation mutants of Bacillus subtilis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Molecular cloning and DNA sequence analysis of Escherichia coli topB, the gene encoding topoisomerase III.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

The Bacillus subtilis gene for the development transcription factor sigma K is generated by excision of a dispensable DNA element containing a sporulation recombinase gene.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Alteration of the Bacillus subtilis glutamine synthetase results in overproduction of the enzyme

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474695

Induced biochemical mutations in Bacillus subtilis.

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000139

Identification and functional analysis of novel (p)ppGpp synthetase genes in Bacillus subtilis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000139

Whole-genome sequencing and variant discovery in C. elegans.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000139

The sequence of the trp operon of Bacillus subtilis 168 (trpC2) revisited

21 January 2018

1 reference

12 December 2020

Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the replication initiator DnaA

1 reference

12 December 2020

Three gene products govern (p)ppGpp production by Streptococcus mutans

1 reference

12 December 2020

The effect of the stringent response on mutation rates in Escherichia coli K-12

1 reference

12 December 2020

Is there a link between mutation rates and the stringent response in Bacillus subtilis?

1 reference

12 December 2020

Characterization of a mutation in the acetolactate synthase of Bacillus subtilis that causes a cold-sensitive phenotype

1 reference

12 December 2020

The CitST two-component system regulates the expression of the Mg-citrate transporter in Bacillus subtilis

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1000139

Identifiers

DOI

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26 July 2017

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26 July 2017

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