Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules (Q33347859)

26 July 2017

title

Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules (English)

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26 July 2017

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26 July 2017

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Christine Lelandais-Brière

26 July 2017

Martin Crespi

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series ordinal

object named as

Christine Lelandais-Brière

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26 July 2017

Florian Frugier

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26 July 2017

Loreto Naya

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26 July 2017

Fanny Calenge

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26 July 2017

Caroline Hartmann

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26 July 2017

publication date

18 September 2009

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26 July 2017

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26 July 2017

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26 July 2017

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26 July 2017

page(s)

2780-2796

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Diversity and evolution of MicroRNA gene clusters

26 July 2017

cites work

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Origin, biogenesis, and activity of plant microRNAs

31 October 2018

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MicroRNAs: target recognition and regulatory functions

31 October 2018

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Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

31 October 2018

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Revisiting the principles of microRNA target recognition and mode of action

31 October 2018

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Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules

31 October 2018

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Criteria for annotation of plant MicroRNAs

31 October 2018

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Genomic analysis of rice microRNA promoters and clusters

31 October 2018

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High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

31 October 2018

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De novo organ formation from differentiated cells: root nodule organogenesis

31 October 2018

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Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula

31 October 2018

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31 October 2018

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31 October 2018

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31 October 2018

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31 October 2018

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31 October 2018

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MicroRNA maturation and action--the expanding roles of ARGONAUTEs

31 October 2018

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The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance.

31 October 2018

1 reference

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The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

31 October 2018

1 reference

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Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica

31 October 2018

1 reference

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Intronic noncoding RNAs and splicing.

31 October 2018

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Evolution of plant microRNAs and their targets

31 October 2018

1 reference

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Widespread translational inhibition by plant miRNAs and siRNAs

31 October 2018

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Coordinating nodule morphogenesis with rhizobial infection in legumes.

31 October 2018

1 reference

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RNA secondary structure analysis using the Vienna RNA package

31 October 2018

1 reference

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A gene expression atlas of the model legume Medicago truncatula.

31 October 2018

1 reference

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MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis

31 October 2018

1 reference

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Novel and nodulation-regulated microRNAs in soybean roots.

31 October 2018

1 reference

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Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).

31 October 2018

1 reference

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Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

31 October 2018

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MicroRNA166 controls root and nodule development in Medicago truncatula.

31 October 2018

1 reference

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31 October 2018

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LeARN: a platform for detecting, clustering and annotating non-coding RNAs

31 October 2018

1 reference

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Conservation and divergence of microRNAs in Populus

31 October 2018

1 reference

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A novel class of bacteria-induced small RNAs in Arabidopsis.

31 October 2018

1 reference

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miRBase: tools for microRNA genomics

31 October 2018

1 reference

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Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.

31 October 2018

1 reference

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Common functions for diverse small RNAs of land plants

31 October 2018

1 reference

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Legume transcription factors: global regulators of plant development and response to the environment.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

Identification of regulatory pathways involved in the reacquisition of root growth after salt stress in Medicago truncatula

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii

31 October 2018

1 reference

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Identification of novel small RNAs in tomato (Solanum lycopersicum).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot

31 October 2018

1 reference

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

31 October 2018

1 reference

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

31 October 2018

1 reference

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Computational identification of microRNAs and their targets.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

Diversity of endogenous small non-coding RNAs in Oryza sativa.

31 October 2018

1 reference

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SERRATE: a new player on the plant microRNA scene.

31 October 2018

1 reference

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MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant

31 October 2018

1 reference

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Arabidopsis endogenous small RNAs: highways and byways

31 October 2018

1 reference

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Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance

31 October 2018

1 reference

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MicroRNA: a new player in stem cells

31 October 2018

1 reference

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Functions of microRNAs and related small RNAs in plants

31 October 2018

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31 October 2018

1 reference

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Post-transcriptional small RNA pathways in plants: mechanisms and regulations

31 October 2018

1 reference

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Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.

31 October 2018

1 reference

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31 October 2018

1 reference

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miRBase: microRNA sequences, targets and gene nomenclature

31 October 2018

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

31 October 2018

1 reference

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Plant microRNA: a small regulatory molecule with big impact

31 October 2018

1 reference

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Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

31 October 2018

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

31 October 2018

1 reference

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Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

31 October 2018

1 reference

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Intrinsic and environmental response pathways that regulate root system architecture

31 October 2018

1 reference

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Identification of new small non-coding RNAs from tobacco and Arabidopsis

31 October 2018

1 reference

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microRNA-directed phasing during trans-acting siRNA biogenesis in plants

31 October 2018

1 reference

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Sequencing the genespaces of Medicago truncatula and Lotus japonicus.

31 October 2018

1 reference

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Nuclear processing and export of microRNAs in Arabidopsis.

31 October 2018

1 reference

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Methylation as a crucial step in plant microRNA biogenesis

31 October 2018

1 reference

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The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes

31 October 2018

1 reference

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ASRP: the Arabidopsis Small RNA Project Database

31 October 2018

1 reference

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Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

31 October 2018

1 reference

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

31 October 2018

1 reference

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Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing.

31 October 2018

1 reference

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Organogenesis of legume root nodules

31 October 2018

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

31 October 2018

1 reference

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MicroRNA targets in Drosophila

31 October 2018

1 reference

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Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes

31 October 2018

1 reference

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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

31 October 2018

1 reference

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A novel family in Medicago truncatula consisting of more than 300 nodule-specific genes coding for small, secreted polypeptides with conserved cysteine motifs

31 October 2018

1 reference

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Prediction of plant microRNA targets

31 October 2018

1 reference

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Identification of tissue-specific microRNAs from mouse

31 October 2018

1 reference

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Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins

31 October 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

31 October 2018

1 reference

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A carbonic anhydrase gene is induced in the nodule primordium and its cell-specific expression is controlled by the presence of Rhizobium during development

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

31 October 2018

1 reference

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Correlation between ultrastructural differentiation of bacteroids and nitrogen fixation in alfalfa nodules

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

Specific Effects of MicroRNAs on the Plant Transcriptome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2768930

Molecular evolution of the rice miR395 gene family

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19767456

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Spatio-temporal accumulation of microRNAs is highly coordinated in developing plant tissues

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19767456

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1105/TPC.109.068130

1 reference

26 July 2017

0 references

1 reference