Modeling HIV quasispecies evolutionary dynamics (Q33296550)

25 July 2017

title

Modeling HIV quasispecies evolutionary dynamics (English)

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25 July 2017

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evolutionary dynamics

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Franco Bagnoli

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Luca Sguanci

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25 July 2017

Pietro Liò

series ordinal

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25 July 2017

publication date

16 August 2007

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25 July 2017

published in

BMC Evolutionary Biology

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25 July 2017

volume

7 Suppl 2

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25 July 2017

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Naïve and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: implications for therapy

25 July 2017

cites work

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Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

21 June 2018

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Regulation of TNF-related apoptosis-inducing ligand on primary CD4+ T cells by HIV-1: role of type I IFN-producing plasmacytoid dendritic cells

21 June 2018

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CD4+ T-cell death induced by infectious and noninfectious HIV-1: role of type 1 interferon-dependent, TRAIL/DR5-mediated apoptosis

21 June 2018

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In-depth, longitudinal analysis of viral quasispecies from an individual triply infected with late-stage human immunodeficiency virus type 1, using a multiple PCR primer approach

21 June 2018

1 reference

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The X4 Phenotype of HIV Type 1 Evolves from R5 in Two Children of Mothers, Carrying X4, and Is Not Linked to Transmission

21 June 2018

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HIV dynamics with multiple infections of target cells

21 June 2018

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Uncoupling coreceptor usage of human immunodeficiency virus type 1 (HIV-1) from macrophage tropism reveals biological properties of CCR5-restricted HIV-1 isolates from patients with acquired immunodeficiency syndrome

21 June 2018

1 reference

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Pathogenesis of macrophage tropic HIV-1.

21 June 2018

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Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains

21 June 2018

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Coevolution of RANTES sensitivity and mode of CCR5 receptor use by human immunodeficiency virus type 1 of the R5 phenotype

21 June 2018

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Fighting a virus with a virus: a dynamic model for HIV-1 therapy.

21 June 2018

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Dynamics and selection of many-strain pathogens

21 June 2018

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Mathematical models of HIV pathogenesis and treatment

21 June 2018

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Intersubtype human immunodeficiency virus type 1 superinfection following seroconversion to primary infection in two injection drug users

21 June 2018

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Molecular phylogenetics: state-of-the-art methods for looking into the past

21 June 2018

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 June 2018

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Viral exploitation and subversion of the immune system through chemokine mimicry

21 June 2018

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The level of CD4 expression limits infection of primary rhesus monkey macrophages by a T-tropic simian immunodeficiency virus and macrophagetropic human immunodeficiency viruses

21 June 2018

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Mechanisms for adaptation of simian immunodeficiency virus to replication in alveolar macrophages

21 June 2018

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Evolvability of an RNA virus is determined by its mutational neighbourhood

21 June 2018

1 reference

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Co-evolution of proteins with their interaction partners

21 June 2018

1 reference

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Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy

21 June 2018

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PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

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Construction of a Novel Virus That Targets HIV-1-Infected Cells and Controls HIV-1 Infection

21 June 2018

1 reference

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HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time

21 June 2018

1 reference

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A mutation data matrix for transmembrane proteins

21 June 2018

1 reference

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 June 2018

1 reference

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Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection

21 June 2018

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Viral dynamics in human immunodeficiency virus type 1 infection

21 June 2018

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The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

21 June 2018

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A subset of human immunodeficiency virus type 1 long-term non-progressors is characterized by the unique presence of ancestral sequences in the viral population

21 June 2018

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Readily acquired secondary infections of human and simian immunodeficiency viruses following single intravenous exposure in non-human primates.

31 October 2018

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Is HIV superinfection worrisome?

31 October 2018

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HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus

31 October 2018

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Regulation of CC chemokine receptor 5 and CD4 expression and human immunodeficiency virus type 1 replication in human macrophages and microglia by T helper type 2 cytokines

31 October 2018

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Towards a general function describing T cell proliferation.

31 October 2018

1 reference

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A stochastic model of cytotoxic T cell responses

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963478

Restriction of HIV Type 1 Infection in Macrophages Heterozygous for a Deletion in the CC-Chemokine Receptor 5 Gene

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963478

Surface CD4 Is Critical to in Vitro HIV Infection of Human Alveolar Macrophages

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963478

Traveling waves in a model of influenza A drift

31 October 2018

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12 December 2020

Affinity maturation and hypermutation in a simulation of the humoral immune response

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12 December 2020

Some scaling principles for the immune system

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12 December 2020

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12 December 2020

Gene conversion among chemokine receptors

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12 December 2020

Pattern formation in one- and two-dimensional shape-space models of the immune system

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12 December 2020

10.1186/1471-2148-7-S2-S5

Identifiers

DOI

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Dimensions Publication ID

25 July 2017

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25 July 2017

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