Classification and identification of bacteria using mass spectrometry-based proteomics (Q33227787)

24 July 2017

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title

Classification and identification of bacteria using mass spectrometry-based proteomics (English)

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24 July 2017

Jacek P Dworzanski

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24 July 2017

A Peter Snyder

series ordinal

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24 July 2017

publication date

1 December 2005

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Expert Review of Proteomics

24 July 2017

published in

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24 July 2017

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24 July 2017

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24 July 2017

page(s)

863-878

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describes a project that uses

24 July 2017

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The species concept for prokaryotes

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Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics

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DNA fingerprinting techniques for microorganisms. A proposal for classification and nomenclature

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Clonal population structure of Pseudomonas avellanae strains of different origin based on multilocus enzyme electrophoresis

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From proteins to proteomes: large scale protein identification by two-dimensional electrophoresis and amino acid analysis

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From genomics to proteomics

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Characterisation of bacteria by matrix-assisted laser desorption/ionisation and electrospray mass spectrometry

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Characterization of intact microorganisms by MALDI mass spectrometry

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MALDI-TOF mass spectrometry of bacteria.

21 January 2018

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Rapid typing of bacteria using matrix-assisted laser desorption ionisation time-of-flight mass spectrometry and pattern recognition software

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Bioinformatics and mass spectrometry for microorganism identification: proteome-wide post-translational modifications and database search algorithms for characterization of intact H. pylori

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Use of an internal control for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of bacteria

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Proteomic profiling of intact mycobacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells

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Rapid identification of environmental bacterial strains by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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The effect of solvent and matrix combinations on the analysis of bacteria by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry

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On-probe sample pretreatment for the detection of proteins above 15 KDa from whole cell bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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Influence of solvents and detergents on matrix-assisted laser desorption/ionization mass spectrometry measurements of proteins and oligonucleotides

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Species differentiation of a diverse suite of Bacillus spores by mass spectrometry-based protein profiling

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How should Helicobacter pylori positive dyspeptic patients be managed?

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Rapid mass spectrometric identification of proteins from two-dimensional polyacrylamide gels after in gel proteolytic digestion.

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Identification and phenotypic characterization of Sphingomonas wittichii strain RW1 by peptide mass fingerprinting using matrix-assisted laser desorption ionization-time of flight mass spectrometry

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Investigation of Protein Patterns in Mammalian Cells and Culture Supernatants by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry

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Characterization of Cryptosporidium parvum by matrix-assisted laser desorption ionization-time of flight mass spectrometry

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Corona plasma discharge for rapid analysis of microorganisms by mass spectrometry

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Monitoring the growth of a bacteria culture by MALDI-MS of whole cells

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Intact cell mass spectrometry (ICMS) used to type methicillin-resistant Staphylococcus aureus: media effects and inter-laboratory reproducibility

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Effect of culture conditions on microorganism identification by matrix-assisted laser desorption ionization mass spectrometry

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Bacterial identification by protein mass mapping combined with an experimentally derived protein mass database

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Detection of specific Bacillus anthracis spore biomarkers by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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Identification of Enterobacteriaceae bacteria by direct matrix-assisted laser desorptiom/ionization mass spectrometric analysis of whole cells

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Bacterial analysis by MALDI-TOF mass spectrometry: an inter-laboratory comparison

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Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry

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Rapid identification and speciation of Haemophilus bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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MALDI-TOFMS compared with other polyphasic taxonomy approaches for the identification and classification of Bacillus pumilus spores

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Extracting and visualizing matrix-assisted laser desorption/ionization time-of-flight mass spectral fingerprints

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Analysis of microbial mixtures by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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Microorganism identification by mass spectrometry and protein database searches

21 January 2018

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Testing the significance of microorganism identification by mass spectrometry and proteome database search

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Microorganism identification by matrix-assisted laser/desorption ionization mass spectrometry and model-derived ribosomal protein biomarkers

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Mass spectrometric methods for generation of protein mass database used for bacterial identification

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An automated multidimensional protein identification technology for shotgun proteomics

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Advances in mass spectrometry for proteome analysis.

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Mass spectrometric approaches for characterizing bacterial proteomes.

21 January 2018

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Characterization of Bacillus spore species and their mixtures using postsource decay with a curved-field reflectron

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Bacillus spore identification via proteolytic peptide mapping with a miniaturized MALDI TOF mass spectrometer

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MALDI analysis of Bacilli in spore mixtures by applying a quadrupole ion trap time-of-flight tandem mass spectrometer

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A targeted proteomics approach to the rapid identification of bacterial cell mixtures by matrix-assisted laser desorption/ionization mass spectrometry

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Rapid characterization of Bacillus spores targeting species-unique peptides produced with an atmospheric pressure matrix-assisted laser desorption/ionization source

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Proteogenomic mapping as a complementary method to perform genome annotation

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Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.

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Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

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Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins.

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Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring

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A mass spectrometric journey into protein and proteome research

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Peptide and protein de novo sequencing by mass spectrometry

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Database resources of the National Center for Biotechnology

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The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches

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Distribution and function of new bacterial intein-like protein domains

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A chimeric ribozyme in clostridium difficile combines features of group I introns and insertion elements

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Group I self-splicing intron in the recA gene of Bacillus anthracis

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Introns in the cytolethal distending toxin gene of Actinobacillus actinomycetemcomitans

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Never say never again: protein glycosylation in pathogenic bacteria

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On-probe digestion of bacterial proteins for MALDI-MS.

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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21 January 2018

Identifiers

DOI

10.1586/14789450.2.6.863

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24 July 2017

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