Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing (Q31079862)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing	scientific article

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

title

Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

main subject

RNA analysis

1 reference

based on heuristic

inferred from title

author

Justin M Zook

object named as

Justin M Zook

series ordinal

1

0 references

author name string

Daniel Samarov

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

Jennifer McDaniel

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

Shurjo K Sen

series ordinal

4

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

Marc Salit

series ordinal

5

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

language of work or name

English

0 references

publication date

31 July 2012

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

published in

PLOS One

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

volume

7

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

issue

7

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

page(s)

e41356

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

copyright license

Creative Commons CC0 License

start time

31 July 2012

1 reference

stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

Identification and correction of systematic error in high-throughput sequence data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Very few RNA and DNA sequence differences in the human transcriptome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Synthetic spike-in standards for RNA-seq experiments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

A mosaic activating mutation in AKT1 associated with the Proteus syndrome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Noninvasive prenatal diagnosis of fetal trisomy 18 and trisomy 13 by maternal plasma DNA sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Widespread RNA and DNA sequence differences in the human transcriptome.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Detection and quantification of rare mutations with massively parallel sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

An adaptable method using human mixed tissue ratiometric controls for benchmarking performance on gene expression microarrays in clinical laboratories

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Improving RNA-Seq expression estimates by correcting for fragment bias

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

High-throughput discovery of rare insertions and deletions in large cohorts

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

A map of human genome variation from population-scale sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Biases in Illumina transcriptome sequencing caused by random hexamer priming

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Complex landscapes of somatic rearrangement in human breast cancer genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

A small-cell lung cancer genome with complex signatures of tobacco exposure

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

A comprehensive catalogue of somatic mutations from a human cancer genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

A diversity profile of the human skin microbiota

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Isolation of rare circulating tumour cells in cancer patients by microchip technology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Estimate of the mutation rate per nucleotide in humans

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

21 June 2018

Identifying sequence variants in the human mitochondrial genome using high-resolution melt (HRM) profiling

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409179

retrieved

25 November 2018

Identifiers

DOI

10.1371/JOURNAL.PONE.0041356

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

ADS bibcode

2012PLoSO...741356Z

0 references

PMC publication ID

3409179

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

PubMed publication ID

22859977

1 reference

stated in

Europe PubMed Central

PMC publication ID

3409179

retrieved

12 August 2017

ResearchGate publication ID

230616855

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q31079862&oldid=1977196532"