Proteogenomic database construction driven from large scale RNA-seq data (Q30651736)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Proteogenomic database construction driven from large scale RNA-seq data	scientific article

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

title

Proteogenomic database construction driven from large scale RNA-seq data (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

main subject

RNA sequencing

0 references

database

0 references

RNA-Seq

1 reference

based on heuristic

inferred from title

database construction

1 reference

based on heuristic

inferred from title

author

Vineet Bafna

series ordinal

8

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

Michael J MacCoss

series ordinal

7

object named as

Michael MacCoss

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

author name string

Sunghee Woo

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

Seong Won Cha

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

Gennifer Merrihew

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

Yupeng He

series ordinal

4

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

Natalie Castellana

series ordinal

5

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

Clark Guest

series ordinal

6

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

publication date

17 July 2013

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

published in

Journal of Proteome Research

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

volume

13

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

issue

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

page(s)

21-28

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

cites work

Ensembl 2013

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Protein identification using customized protein sequence databases derived from RNA-Seq data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Regulation of Caenorhabditis elegans vitellogenesis by DAF-2/IIS through separable transcriptional and posttranscriptional mechanisms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

A bioinformatics workflow for variant peptide detection in shotgun proteomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Proteogenomics to discover the full coding content of genomes: a computational perspective

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

The 1000 Genomes Project: new opportunities for research and social challenges

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Multiplexed size separation of intact proteins in solution phase for mass spectrometry

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

The Sequence Alignment/Map format and SAMtools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Discovery and revision of Arabidopsis genes by proteogenomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

NCBI Reference Sequences: current status, policy and new initiatives

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Novel peptide identification from tandem mass spectra using ESTs and sequence database compression

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Improving gene annotation using peptide mass spectrometry

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

The ENCODE (ENCyclopedia Of DNA Elements) Project

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

The human genome browser at UCSC

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

The genetics of Caenorhabditis elegans

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

Basic local alignment search tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034692

retrieved

20 June 2018

1000 Genomes project

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/23802565

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1021/PR400294C

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

PMC publication ID

4034692

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

PubMed publication ID

23802565

1 reference

stated in

Europe PubMed Central

PMC publication ID

4034692

retrieved

15 September 2017

ResearchGate publication ID

242331898

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30651736&oldid=2172677380"