Tuning a riboswitch response through structural extension of a pseudoknot. (Q30544038)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23940363%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

Tuning a riboswitch response through structural extension of a pseudoknot (English)

1 reference

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7 March 2020

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7 March 2020

1 reference

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7 March 2020

Roger B Altman

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7 March 2020

Veronika Schwarz

series ordinal

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7 March 2020

Andrea Haller

series ordinal

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7 March 2020

Ronald Micura

series ordinal

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7 March 2020

language of work or name

English

0 references

publication date

12 August 2013

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

7 March 2020

published in

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7 March 2020

volume

110

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7 March 2020

issue

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7 March 2020

page(s)

E3256-64

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Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold

7 March 2020

cites work

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14 July 2018

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Exploiting preQ(1) riboswitches to regulate ribosomal frameshifting.

14 July 2018

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Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain

14 July 2018

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Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch

14 July 2018

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B12 cofactors directly stabilize an mRNA regulatory switch

14 July 2018

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Molecular recognition and function of riboswitches

14 July 2018

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Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding

14 July 2018

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Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch.

14 July 2018

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Riboswitch structure in the ligand‐free state

14 July 2018

1 reference

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Prospects for riboswitch discovery and analysis

14 July 2018

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Riboswitches: Discovery of Drugs That Target Bacterial Gene-Regulatory RNAs

14 July 2018

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Exploring RNA Structural Codes with SHAPE Chemistry

14 July 2018

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Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation

14 July 2018

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Molecular insights into the ligand-controlled organization of the SAM-I riboswitch

14 July 2018

1 reference

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Comparison of Solution and Crystal Structures of PreQ1 Riboswitch Reveals Calcium-Induced Changes in Conformation and Dynamics

14 July 2018

1 reference

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Cooperative and directional folding of the preQ1 riboswitch aptamer domain

14 July 2018

1 reference

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Riboswitches: Structures and Mechanisms

14 July 2018

1 reference

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Structural basis for recognition of S-adenosylhomocysteine by riboswitches

14 July 2018

1 reference

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PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps

14 July 2018

1 reference

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Folding of a transcriptionally acting preQ1 riboswitch

14 July 2018

1 reference

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A fast dynamic mode of the EF-G-bound ribosome.

14 July 2018

1 reference

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Spontaneous formation of the unlocked state of the ribosome is a multistep process

14 July 2018

1 reference

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A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

14 July 2018

1 reference

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Mitigating unwanted photophysical processes for improved single-molecule fluorescence imaging

14 July 2018

1 reference

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Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

14 July 2018

1 reference

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The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain

14 July 2018

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Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

14 July 2018

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Riboswitches: ancient and promising genetic regulators

14 July 2018

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Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids

14 July 2018

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A practical guide to single-molecule FRET

14 July 2018

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Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine

14 July 2018

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Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria

14 July 2018

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Structure of the SAM-II riboswitch bound to S-adenosylmethionine

14 July 2018

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Focus on function: single molecule RNA enzymology.

14 July 2018

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A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

14 July 2018

1 reference

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Identification of two distinct hybrid state intermediates on the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761628

Structures of RNA switches: insight into molecular recognition and tertiary structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761628

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761628

A pseudoknot in the 3' non-core region of the glmS ribozyme enhances self-cleavage activity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761628

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

14 July 2018

1 reference

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Asymmetry in RNA pseudoknots: observation and theory

14 July 2018

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SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

14 July 2018

1 reference

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Model-based fitting of single-channel dwell-time distributions

14 July 2018

1 reference

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The riboswitch control of bacterial metabolism

14 July 2018

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PSEUDOVIEWER2: Visualization of RNA pseudoknots of any type

14 July 2018

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Small interfering RNAs and their chemical synthesis

14 July 2018

1 reference

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PseudoBase: a database with RNA pseudoknots

14 July 2018

1 reference

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Fluorescence resonance energy transfer and nucleic acids

14 July 2018

1 reference

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Conformational capture of the SAM-II riboswitch

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1304585110

The preparation of site-specifically modified riboswitch domains as an example for enzymatic ligation of chemically synthesized RNA fragments.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1304585110

Evidence for Pseudoknot Formation of Class I preQ1Riboswitch Aptamers

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1304585110

A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23940363

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Pseudoknot preorganization of the preQ1 class I riboswitch

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23940363

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1304585110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23940363%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23940363%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

23940363

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23940363%20AND%20SRC:MED&resulttype=core&format=json