Sequence-specific binding of counterions to B-DNA. (Q30504230)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639130%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

title

Sequence-specific binding of counterions to B-DNA (English)

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3 November 2019

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3 November 2019

V P Denisov

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3 November 2019

language of work or name

English

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publication date

1 January 2000

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Proceedings of the National Academy of Sciences of the United States of America

3 November 2019

published in

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3 November 2019

volume

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3 November 2019

issue

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3 November 2019

page(s)

629-633

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Relative binding affinities of monovalent cations for double-stranded DNA.

3 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

The Alkali Ion-DNA Interaction as Reflected in the Nuclear Relaxation Rates of Na and Rb.

28 July 2018

1 reference

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DNA structure: cations in charge?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

DNA bending by small, mobile multivalent cations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Simulations of the molecular dynamics of nucleic acids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

The B-DNA dodecamer at high resolution reveals a spine of water on sodium

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Kinetics of DNA hydration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Antibiotic-DNA interactions: intermolecular nuclear Overhauser effects in the netropsin-d(C-G-C-G-A-A-T-T-C-G-C-G) complex in solution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Sodium-23 NMR relaxation study of the effects of conformation and base composition on the interactions of counterions with double-helical DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

A 23Na-NMR study of sodium-DNA interactions in concentrated DNA solutions at low-supporting electrolyte concentration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

RNA double-helical fragments at atomic resolution. I. The crystal and molecular structure of sodium adenylyl-3',5'-uridine hexahydrate

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15381

Sodium ions and water molecules in the structure of poly(dA).poly(dT).

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

Micelle size and orientational order across the nematic-isotropic transition: A field-dependent nuclear-spin-relaxation study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

23Na NMR Spectroscopy of Solids: Interpretation of Quadrupole Interaction Parameters and Chemical Shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.629

Sodium ion and solvent nuclear relaxation results in aqueous solutions of DNA

21 January 2018

1 reference

12 December 2020

Structure of the B DNA cationic shell as revealed by an X-ray diffraction study of CsDNA. Sequence-specific cationic stabilization of B form DNA

1 reference

12 December 2020

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

12 December 2020

The dependence of the surface electrostatic potential of B-DNA on environmental factors

1 reference

12 December 2020

Determination of fast dynamics of nucleic acids by NMR

1 reference

12 December 2020

Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.97.2.629

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639130%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

0 references

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3 November 2019

PubMed publication ID

10639130

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639130%20AND%20SRC:MED&resulttype=core&format=json