Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data (Q30477694)

30 October 2017

Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data (English)

1 reference

30 October 2017

Stephen B Dunnett

0 references

Charles Kooperberg

1 reference

30 October 2017

Ruth Luthi-Carter

1 reference

30 October 2017

Richard L M Faull

1 reference

30 October 2017

Lesley Jones

1 reference

30 October 2017

Darlene R Goldstein

1 reference

30 October 2017

Gareth Hughes

1 reference

30 October 2017

Andrew D Strand

1 reference

30 October 2017

Francois Collin

1 reference

30 October 2017

Aaron Aragaki

1 reference

30 October 2017

James M Olson

1 reference

30 October 2017

Sarah J Augood

1 reference

30 October 2017

Valentina Moskvina

1 reference

30 October 2017

Angela K Hodges

1 reference

30 October 2017

19 April 2006

1 reference

30 October 2017

1 reference

30 October 2017

1 reference

30 October 2017

211

1 reference

Creative Commons Attribution 2.0 Generic

30 October 2017

start time

19 April 2006

1 reference

April 2022 Public Data File from Crossref

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

affy

object named as

affy

affy package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Regional and cellular gene expression changes in human Huntington's disease brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Trends in the quality of data from 5168 oligonucleotide microarrays from a single facility.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

A microarray study of post-mortem mRNA degradation in mouse brain tissue

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

NCBI GEO: mining millions of expression profiles--database and tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Bioconductor: open software development for computational biology and bioinformatics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

affy--analysis of Affymetrix GeneChip data at the probe level

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Gene expression profiling in the post-mortem human brain--no cause for dismay.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Multivariate analysis of RNA levels from postmortem human brains as measured by three different methods of RT-PCR. Stanley Neuropathology Consortium

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Evaluation of quality-control criteria for microarray gene expression analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

The effect of replication on gene expression microarray experiments

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Robust estimators for expression analysis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1524996

Tissue pH as an indicator of mRNA preservation in human post-mortem brain

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16623940

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The relative importance of premortem acidosis and postmortem interval for human brain gene expression studies: selective mRNA vulnerability and comparison with their encoded proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16623940

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-211

1 reference

journals/bmcbi/JonesGHSCDKAOAFLMH06

30 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

30 October 2017

PubMed publication ID

16623940

1 reference