cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination (Q30398255)

21 June 2017

title

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination (English)

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cryogenic electron microscopy

21 June 2017

main subject

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Marcus A Brubaker

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John L Rubinstein

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David J Fleet

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Ali Punjani

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21 June 2017

publication date

6 February 2017

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21 June 2017

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21 June 2017

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21 June 2017

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21 June 2017

page(s)

290-296

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Structure of the TRPV1 ion channel determined by electron cryo-microscopy

21 June 2017

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Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles

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Structure of a yeast spliceosome at 3.6-angstrom resolution

21 January 2018

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2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition

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The 3.8 Å resolution cryo-EM structure of Zika virus

21 January 2018

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Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome

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Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2.

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Avoiding the pitfalls of single particle cryo-electron microscopy: Einstein from noise

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Outcome of the first electron microscopy validation task force meeting

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A Bayesian view on cryo-EM structure determination.

21 January 2018

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FREALIGN: high-resolution refinement of single particle structures

21 January 2018

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Gctf: Real-time CTF determination and correction

21 January 2018

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gEMpicker: a highly parallel GPU-accelerated particle picking tool for cryo-electron microscopy.

21 January 2018

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A maximum-likelihood approach to single-particle image refinement.

21 January 2018

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Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance

21 January 2018

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Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase

21 January 2018

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An Algorithm for the Traveling Salesman Problem

21 January 2018

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Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine

21 January 2018

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Prevention of overfitting in cryo-EM structure determination

21 January 2018

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Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

21 January 2018

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21 January 2018

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7 January 2021

based on heuristic

High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy

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Single particle analysis integrated with microscopy: a high-throughput approach for reconstructing icosahedral particles.

21 January 2018

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Validation of cryo-EM structure of IP₃R1 channel

21 January 2018

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Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli

21 January 2018

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The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles

21 January 2018

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A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy.

21 January 2018

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A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy.

21 January 2018

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SIMPLE: Software for ab initio reconstruction of heterogeneous single-particles

21 January 2018

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PRIME: probabilistic initial 3D model generation for single-particle cryo-electron microscopy

21 January 2018

1 reference

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SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction

21 January 2018

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Low cost, high performance processing of single particle cryo-electron microscopy data in the cloud

21 January 2018

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Sampling the conformational space of the catalytic subunit of human γ-secretase

21 January 2018

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Alignment of cryo-EM movies of individual particles by optimization of image translations.

21 January 2018

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Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6

21 January 2018

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EMPIAR: a public archive for raw electron microscopy image data.

21 January 2018

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The Resolution Revolution

21 January 2018

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Structural biology. Beyond blob-ology

21 January 2018

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inferred from DOI database lookup

7 January 2021

based on heuristic

2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4169

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.4169

1 reference

Dimensions Publication ID

21 June 2017

1083686092

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1 reference