Global multiple protein-protein interaction network alignment by combining pairwise network alignments. (Q30379762)

12 August 2017

Global multiple protein-protein interaction network alignment by combining pairwise network alignments. (English)

1 reference

protein-protein interaction

12 August 2017

1 reference

Jakob Dohrmann

1 reference

12 August 2017

Juris Puchin

series ordinal

1 reference

12 August 2017

Rahul Singh

series ordinal

1 reference

12 August 2017

25 September 2015

1 reference

12 August 2017

1 reference

12 August 2017

16 Suppl 13

1 reference

12 August 2017

S11

1 reference

A comparison of algorithms for the pairwise alignment of biological networks

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Experimental evolution of protein-protein interaction networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

NETAL: a new graph-based method for global alignment of protein-protein interaction networks.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

SPINAL: scalable protein interaction network alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Systems biology of pathogen-host interaction: networks of protein-protein interaction within pathogens and pathogen-human interactions in the post-genomic era.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

STAR: ultrafast universal RNA-seq aligner

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

AlignNemo: a local network alignment method to integrate homology and topology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Global landscape of HIV-human protein complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

The IntAct molecular interaction database in 2012

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Network-based prediction and analysis of HIV dependency factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Structural principles within the human-virus protein-protein interaction network

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

SubMAP: aligning metabolic pathways with subnetwork mappings

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Protein-protein interaction and pathway databases, a graphical review

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Optimal network alignment with graphlet degree vectors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Topological network alignment uncovers biological function and phylogeny

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Automatic parameter learning for multiple local network alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Global alignment of protein-protein interaction networks by graph matching methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

IsoRankN: spectral methods for global alignment of multiple protein networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Global alignment of multiple protein interaction networks with application to functional orthology detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Protein networks in disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

FunSimMat: a comprehensive functional similarity database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Graemlin: general and robust alignment of multiple large interaction networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Cross-species analysis of biological networks by Bayesian alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

BioGRID: a general repository for interaction datasets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

A protein interaction network of the malaria parasite Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Conserved patterns of protein interaction in multiple species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Mass spectrometry-based proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Analyzing yeast protein-protein interaction data obtained from different sources

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

A comprehensive two-hybrid analysis to explore the yeast protein interactome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Functional and topological characterization of protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Co-evolutionary analysis reveals insights into protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Integrative network alignment reveals large regions of global network similarity in yeast and human

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Identification of functional modules from conserved ancestral protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Pairwise alignment of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Comparing protein interaction networks via a graph match-and-split algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

The identification of similarities between biological networks: application to the metabolome and interactome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Biological network comparison using graphlet degree distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-16-S13-S11

Local optimization for global alignment of protein interaction networks

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4597059

10.1186/1471-2105-16-S13-S11

26 November 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

26423128

1 reference