SAR11 bacteria linked to ocean anoxia and nitrogen loss. (Q30363442)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27487207%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

SAR11 bacteria linked to ocean anoxia and nitrogen loss (English)

1 reference

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20 March 2020

1 reference

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20 March 2020

1 reference

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20 March 2020

1 reference

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20 March 2020

Luis Miguel Rodríguez-R

1 reference

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Konstantinos T. Konstantinidis

20 March 2020

object named as

Konstantinos T Konstantinidis

1 reference

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20 March 2020

Frank J Stewart

1 reference

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20 March 2020

Tanja Woyke

1 reference

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20 March 2020

Jieying Wu

1 reference

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20 March 2020

Sangeeta Nath

1 reference

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20 March 2020

Andrew S Burns

1 reference

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20 March 2020

Piyush Ranjan

1 reference

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20 March 2020

Neha Sarode

1 reference

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20 March 2020

Cory C Padilla

1 reference

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20 March 2020

Benjamin K Stone

1 reference

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20 March 2020

Laura A Bristow

1 reference

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20 March 2020

Morten Larsen

1 reference

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20 March 2020

Jennifer B Glass

1 reference

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20 March 2020

Bo Thamdrup

1 reference

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20 March 2020

language of work or name

English

0 references

publication date

3 August 2016

1 reference

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20 March 2020

1 reference

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20 March 2020

volume

536

1 reference

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20 March 2020

issue

7615

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20 March 2020

page(s)

179-183

1 reference

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Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone.

20 March 2020

cites work

1 reference

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Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.

3 June 2018

1 reference

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Dynamic subcellular localization of a respiratory complex controls bacterial respiration.

3 June 2018

1 reference

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

3 June 2018

1 reference

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Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

3 June 2018

1 reference

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Evolutionary origin of a streamlined marine bacterioplankton lineage

3 June 2018

1 reference

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Fast and sensitive protein alignment using DIAMOND

3 June 2018

1 reference

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UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

3 June 2018

1 reference

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Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile

3 June 2018

1 reference

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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

3 June 2018

1 reference

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Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea.

3 June 2018

1 reference

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A new highly sensitive method to assess respiration rates and kinetics of natural planktonic communities by use of the switchable trace oxygen sensor and reduced oxygen concentrations

3 June 2018

1 reference

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MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

3 June 2018

1 reference

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Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Pfam: the protein families database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Comparative and phylogenomic evidence that the alphaproteobacterium HIMB59 is not a member of the oceanic SAR11 clade

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Insights into the phylogeny and coding potential of microbial dark matter

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

The unique metabolism of SAR11 aquatic bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Analysis of composition and structure of coastal to mesopelagic bacterioplankton communities in the northern gulf of Mexico

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Streamlining and core genome conservation among highly divergent members of the SAR11 clade

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Microbial oceanography of anoxic oxygen minimum zones

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

The SAR11 group of alpha-proteobacteria is not related to the origin of mitochondria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Oxygen sensitivity of anammox and coupled N-cycle processes in oxygen minimum zones

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

FragGeneScan: predicting genes in short and error-prone reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Ab initio gene identification in metagenomic sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Genomic patterns of recombination, clonal divergence and environment in marine microbial populations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

The prokaryotic complex iron-sulfur molybdoenzyme family.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Look on the positive side! The orientation, identification and bioenergetics of 'Archaeal' membrane-bound nitrate reductases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Identification, characterization, and classification of genes encoding perchlorate reductase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Genomic DNA amplification from a single bacterium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Architecture of NarGH reveals a structural classification of Mo-bisMGD enzymes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

SAR11 clade dominates ocean surface bacterioplankton communities.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Denitrifying genes in bacterial and Archaeal genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Comprehensive human genome amplification using multiple displacement amplification

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Biochemical and immunological evidence for a second nitrate reductase in Escherichia coli K12.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Basic local alignment search tool

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Purification and further characterization of the second nitrate reductase of Escherichia coli K12.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

Sequence and electron paramagnetic resonance analyses of nitrate reductase NarGH from a denitrifying halophilic euryarchaeote Haloarcula marismortui

3 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE19068

Effect of lacY expression on homogeneity of induction from the P(tac) and P(trc) promoters by natural and synthetic inducers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE19068

Fate and effect of benzalkonium chlorides in a continuous-flow biological nitrogen removal system treating poultry processing wastewater.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE19068

Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE19068

Oxygen minimum zones (OMZs) in the modern ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE19068

Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE19068

Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990128

ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27487207

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE19068

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27487207%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27487207%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

27487207

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27487207%20AND%20SRC:MED&resulttype=core&format=json