Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. (Q30358489)

14 October 2017

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. (English)

1 reference

14 October 2017

0 references

0 references

Tarjei S Mikkelsen

1 reference

14 October 2017

Lauren B A Woodruff

1 reference

14 October 2017

Thomas E Gorochowski

1 reference

14 October 2017

Nicholas Roehner

1 reference

14 October 2017

Douglas Densmore

1 reference

14 October 2017

D Benjamin Gordon

1 reference

14 October 2017

Christopher A Voigt

1 reference

14 October 2017

language of work or name

English

0 references

publication date

21 December 2016

1 reference

14 October 2017

Nucleic Acids Research

1 reference

14 October 2017

1 reference

14 October 2017

1 reference

14 October 2017

1553-1565

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

14 October 2017

start time

22 December 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

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3 June 2018

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CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology

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Use of plant colonizing bacteria as chassis for transfer of N₂-fixation to cereals

3 June 2018

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3 June 2018

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Functional optimization of gene clusters by combinatorial design and assembly

3 June 2018

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PaperClip: rapid multi-part DNA assembly from existing libraries

3 June 2018

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Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria

3 June 2018

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Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes

3 June 2018

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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

3 June 2018

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Recent advances in DNA assembly technologies

3 June 2018

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Heuristic for maximizing DNA reuse in synthetic DNA library assembly

3 June 2018

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SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing

3 June 2018

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Library construction for next-generation sequencing: overviews and challenges

3 June 2018

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Genomic mining of prokaryotic repressors for orthogonal logic gates

3 June 2018

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Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites.

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

High-throughput, cost-effective verification of structural DNA assembly

3 June 2018

1 reference

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DNA assembly techniques for next-generation combinatorial biosynthesis of natural products

3 June 2018

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Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Composability of regulatory sequences controlling transcription and translation in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications

3 June 2018

1 reference

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Characterization of 582 natural and synthetic terminators and quantification of their design constraints

3 June 2018

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Synthetic analog computation in living cells.

3 June 2018

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An end-to-end workflow for engineering of biological networks from high-level specifications

3 June 2018

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j5 DNA assembly design automation software

3 June 2018

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Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing

3 June 2018

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Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules

3 June 2018

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Modular control of multiple pathways using engineered orthogonal T7 polymerases

3 June 2018

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Primer3--new capabilities and interfaces

3 June 2018

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Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools

3 June 2018

1 reference

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'Shotgun DNA synthesis' for the high-throughput construction of large DNA molecules

3 June 2018

1 reference

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Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Genetic design automation: engineering fantasy or scientific renewal?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Enzymatic assembly of overlapping DNA fragments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

A Modular Cloning System for Standardized Assembly of Multigene Constructs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

DNA assembly for synthetic biology: from parts to pathways and beyond.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Algorithms for automated DNA assembly

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Target-enrichment strategies for next-generation sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Parallel, tag-directed assembly of locally derived short sequence reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Automated design of synthetic ribosome binding sites to control protein expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Enzymatic assembly of DNA molecules up to several hundred kilobases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Continuous base identification for single-molecule nanopore DNA sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

A one pot, one step, precision cloning method with high throughput capability

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Refinement and standardization of synthetic biological parts and devices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Engineering BioBrick vectors from BioBrick parts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Enhancements and modifications of primer design program Primer3.

3 June 2018

1 reference

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Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Maturation of nitrogenase: a biochemical puzzle

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Combinatorial biosynthesis of antitumor indolocarbazole compounds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Accurate multiplex gene synthesis from programmable DNA microchips

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Combinatorial synthesis of genetic networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

A synthetic oscillatory network of transcriptional regulators

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Primer3 on the WWW for general users and for biologist programmers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

In situ studies on N2 fixation using the acetylene reduction technique

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

3 June 2018

Multiplex DNA Sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Assembly of highly standardized gene fragments for high-level production of porphyrins in E. coli.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Precise and reliable gene expression via standard transcription and translation initiation elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Sharing Structure and Function in Biological Design with SBOL 2.0.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Combinatorial recombination of gene fragments to construct a library of chimeras

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Randomized BioBrick assembly: a novel DNA assembly method for randomizing and optimizing genetic circuits and metabolic pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Anchored multiplex PCR for targeted next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Interactive assembly algorithms for molecular cloning.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Measuring variability in trophic status in the Lake Waco/Bosque River Watershed

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Adaptive probabilities of crossover and mutation in genetic algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

A New Method of Locating the Maximum Point of an Arbitrary Multipeak Curve in the Presence of Noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1226

Combinatorial recombination of gene fragments to construct a library of chimeras

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5388403

Chain reaction cloning: a one-step method for directional ligation of multiple DNA fragments

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28007941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rapid and reliable DNA assembly via ligase cycling reaction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28007941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKW1226

1 reference

14 October 2017

1 reference

14 October 2017

PubMed publication ID

28007941

1 reference