Zika virus evolution and spread in the Americas (Q30145571)

6 June 2017

title

Zika virus evolution and spread in the Americas (English)

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6 June 2017

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Refugio Robles-Sikisaka

object named as

Refugio Robles-Sikisaka

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Christopher Tomkins-Tinch

6 June 2017

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object named as

Christopher H Tomkins-Tinch

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Adrianne Gladden-Young

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Wim Degrave

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6 June 2017

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Rickey R Shah

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Lauren M Paul

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Patricia T Bozza

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Fernando A Bozza

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6 June 2017

Yasmine Rangel Vieira

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Yasmine R Vieira

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6 June 2017

Giselle Barbosa-Lima

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6 June 2017

Amanda L Tan

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6 June 2017

Scott F Michael

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6 June 2017

M Elizabeth Halloran

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6 June 2017

Stephen F Schaffner

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6 June 2017

Marshall R Cone

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6 June 2017

Christian B Matranga

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6 June 2017

Kayla G Barnes

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6 June 2017

Sarah M Winnicki

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6 June 2017

Bronwyn L MacInnis

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6 June 2017

Edgar W Kopp

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Catherine A Freije

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Nathan L Yozwiak

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6 June 2017

Andrew C Cannons

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Mario C Porcelli

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Carolyn M Barcellona

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Cynthia Y Luo

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Joshua J Anzinger

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Leda A Parham

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Aaron E Lin

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6 June 2017

Clarissa Valim

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Simon H Ye

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6 June 2017

Daniel J Park

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6 June 2017

Kelly N Hogan

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6 June 2017

Kimberly F Garcia

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6 June 2017

Rosa M Gélvez Ramírez

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6 June 2017

Maria C Miranda Montoya

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6 June 2017

Diana P Rojas

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6 June 2017

Catherine M Brown

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6 June 2017

Luis Villar

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6 June 2017

Thiago M L Souza

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6 June 2017

language of work or name

English

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publication date

24 May 2017

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6 June 2017

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on focus list of Wikimedia project

6 June 2017

volume

546

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issue

7658

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page(s)

411-415

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WikiProject Zika Corpus

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cites work

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Vital Signs: Update on Zika Virus–Associated Birth Defects and Evaluation of All U.S. Infants with Congenital Zika Virus Exposure — U.S. Zika Pregnancy Registry, 2016

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Persistence of Zika Virus in Body Fluids — Preliminary Report

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen).

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Zika virus in the Americas: Early epidemiological and genetic findings

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Zika Virus in the Americas — Yet Another Arbovirus Threat

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Database resources of the National Center for Biotechnology Information

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Emergence and potential for spread of Chikungunya virus in Brazil

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Functions of the 3' and 5' genome RNA regions of members of the genus Flavivirus

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Detection of Zika virus in urine

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

NCBI viral genomes resource

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Clinical illness and outcomes in patients with Ebola in Sierra Leone

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Imported Zika virus infection from the Cook Islands into Australia, 2014

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Kraken: ultrafast metagenomic sequence classification using exact alignments

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

First case of laboratory-confirmed Zika virus infection imported into Europe, November 2013

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Quantitative real-time PCR detection of Zika virus and evaluation with field-caught mosquitoes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Dengue virus type 3 adaptive changes during epidemics in São Jose de Rio Preto, Brazil, 2006-2007.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

CD-HIT: accelerated for clustering the next-generation sequencing data

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

A diagnostic polymerase chain reaction assay for Zika virus

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Gene and translation initiation site prediction in metagenomic sequences

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Bayesian phylogenetics with BEAUti and the BEAST 1.7

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Full-length transcriptome assembly from RNA-Seq data without a reference genome

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

A Bayesian phylogenetic method to estimate unknown sequence ages

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Yellow Fever Virus Exhibits Slower Evolutionary Dynamics than Dengue Virus

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Dengue virus pathogenesis: an integrated view

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

HIV-1 evolution in gag and env is highly correlated but exhibits different relationships with viral load and the immune response

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

The Sequence Alignment/Map format and SAMtools

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

PlasmoDB: a functional genomic database for malaria parasites

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

One-step RT-PCR for detection of Zika virus

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

A single mutation in chikungunya virus affects vector specificity and epidemic potential

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Relaxed phylogenetics and dating with confidence

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Bayesian coalescent inference of past population dynamics from molecular sequences

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

Amino acid substitution matrices from protein blocks

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5563848

26 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE22402

inferred from DOI database lookup

7 January 2021

based on heuristic

FactoMineR: AnRPackage for Multivariate Analysis

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE22402

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE22402

1 reference

6 June 2017

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1 reference