ePlant and the 3D data display initiative: integrative systems biology on the world wide web (Q30000958)

0 references

David Di Biase

0 references

Hardeep Nahal

0 references

Garon La

0 references

Shokoufeh Khodabandeh

0 references

Yani Chen

0 references

Kante Easley

0 references

Dinesh Christendat

0 references

Lawrence Kelley

Creative Commons Attribution 4.0 International

0 references

language of work or name

English

0 references

publication date

10 January 2011

0 references

0 references

0 references

0 references

e15237

0 references

start time

10 January 2011

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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21 May 2017

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21 May 2017

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21 May 2017

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21 May 2017

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21 May 2017

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GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

21 May 2017

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Life Sciences and the web: a new era for collaboration

21 May 2017

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Network motifs: theory and experimental approaches

21 May 2017

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Reactome: a knowledge base of biologic pathways and processes

21 May 2017

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CDD: a conserved domain database for interactive domain family analysis

21 May 2017

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Noise-induced Min phenotypes in E. coli

21 May 2017

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Pathguide: a pathway resource list

21 May 2017

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

21 May 2017

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The pattern of polymorphism in Arabidopsis thaliana

21 May 2017

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A gene expression map of Arabidopsis thaliana development

21 May 2017

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Transcriptome analysis of haploid male gametophyte development in Arabidopsis

21 May 2017

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Bioconductor: open software development for computational biology and bioinformatics

21 May 2017

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 May 2017

1 reference

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Multiple sequence alignment with the Clustal series of programs

21 May 2017

1 reference

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BIND: the Biomolecular Interaction Network Database

21 May 2017

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The Bioperl toolkit: Perl modules for the life sciences

21 May 2017

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

21 May 2017

1 reference

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KEGG: kyoto encyclopedia of genes and genomes

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Collective dynamics of 'small-world' networks

21 May 2017

1 reference

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Basic local alignment search tool

21 May 2017

1 reference

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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

21 May 2017

1 reference

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Visualization of omics data for systems biology

21 May 2017

1 reference

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Visualizing biological data-now and in the future

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses

20 June 2018

1 reference

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How to visually interpret biological data using networks

20 June 2018

1 reference

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Network visualization and analysis of gene expression data using BioLayout Express(3D).

20 June 2018

1 reference

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Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil

20 June 2018

1 reference

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Web-queryable large-scale data sets for hypothesis generation in plant biology

20 June 2018

1 reference

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Gene expression map of the Arabidopsis shoot apical meristem stem cell niche

20 June 2018

1 reference

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FORG3D: force-directed 3D graph editor for visualization of integrated genome scale data

20 June 2018

1 reference

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Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach

20 June 2018

1 reference

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Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Evolutionary diversification of plant shikimate kinase gene duplicates

20 June 2018

1 reference

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Arena3D: visualization of biological networks in 3D.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

20 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

20 June 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Isolation of a strong Arabidopsis guard cell promoter and its potential as a research tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Predicting protein function from sequence and structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

20 June 2018

Executable cell biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

ENFIN a network to enhance integrative systems biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Automated data integration for developmental biological research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

A predicted interactome for Arabidopsis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

SUBA: the Arabidopsis Subcellular Database.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Advances in systems biology: measurement, modeling and representation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Cuticular lipid composition, surface structure, and gene expression in Arabidopsis stem epidermis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Evolution of web services in bioinformatics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

GMD@CSB.DB: the Golm Metabolome Database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

A gene expression map of the Arabidopsis root

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Integrating 'omic' information: a bridge between genomics and systems biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Bioverse: Functional, structural and contextual annotation of proteins and proteomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Arabidopsis map-based cloning in the post-genome era

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

E-CELL: software environment for whole-cell simulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018417

Information Integration in Molecular Bioscience

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015237

Arabidopsis reactome: a foundation knowledgebase for plant systems biology

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015237

E-Cell 2: multi-platform E-Cell simulation system.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015237

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21249219

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0015237

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3335246

ADS bibcode

2011PLoSO...615237F

0 references

OpenCitations bibliographic resource ID

3335246

1 reference